Basic Information
Gene Model:Bol033995
Gene Family:U-box Gene Family
Chromosome:Cun
Scaffold:Scaffold000040
Sequence:
 | 
Gene Structure
Nucleotide Length:1345 bp
Transcript Length:693 bp
Protein Length:230 aa
Strand:+
Location:Scaffold000040: 696720 : 698064
Gene CDSs(6): 1-90 | 225-297 | 551-677 | 780-942 | 1024-1134 | 1217-1345 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:1.25.40.10no description 4 108 1.5e-05IPR011990Tetratricopeptide-like helical
Gene3DG3DSA:3.30.40.10no description 148 225 3.2e-18Not foundNot found
superfamilySSF48452TPR-like 3 92 4.1e-08Not foundNot found
superfamilySSF57850RING/U-box 156 211 8.5e-14Not foundNot found
HMMSmartSM00504no description 155 218 1.9e-25IPR003613U box domain
HMMPantherPTHR22904TPR REPEAT CONTAININ 6 224 5.8e-62Not foundNot found
HMMPantherPTHR22904:SF27CARBOXY TERMINUS OF 6 224 5.8e-62Not foundNot found
HMMPfamPF04564U-box 151 225 7e-44IPR003613U box domain
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005488 Molecular Function binding
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q9SRS91e-101CHIP_ARATH E3 ubiquitin-protein ligase CHIP OS=Arabidopsis thaliana GN=CHIP PE=1 SV=1
TrEMBL
Best HitE_value Description
B9T5H92e-77B9T5H9_RICCO Heat shock protein 70 (HSP70)-interacting protein, putative OS=Ricinus communis GN=RCOM_0379230 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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