Basic Information
Gene Model:Bol033844
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000041
Sequence:
 | 
Gene Structure
Nucleotide Length:1623 bp
Transcript Length:1092 bp
Protein Length:363 aa
Strand:+
Location:C07: 46742578 : 46744200
Gene CDSs(4): 1-262 | 384-712 | 1034-1270 | 1360-1623 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00481PP2C 117 295 2.8e-29IPR014045Protein phosphatase 2C, N-terminal
Segsegseg 279 297 NANot foundNot found
Segsegseg 163 174 NANot foundNot found
PatternScanPS01032PP2C 62 70 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
HMMSmartSM00332no description 26 321 3.9e-71IPR001932Protein phosphatase 2C-related
Gene3DG3DSA:3.60.40.10no description 45 327 5e-52IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832PROTEIN PHOSPHATASE 25 360 6.1e-162IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF97PROTEIN PHOSPHATASE- 25 360 6.1e-162Not foundNot found
superfamilySSF81606Protein serine/threo 37 328 7.5e-55IPR001932Protein phosphatase 2C-related
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
O817600.0P2C63_ARATH Probable protein phosphatase 2C 63 OS=Arabidopsis thaliana GN=At4g33920 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9GHV41e-147B9GHV4_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1069683 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3254(13 genes,8 taxa):Arabidopsis thalianaAT4G33920.1
ORTHOMCL3254(13 genes,8 taxa):Brassica oleraceaBol014291
ORTHOMCL3254(13 genes,8 taxa):Brassica oleraceaBol033844
ORTHOMCL3254(13 genes,8 taxa):Brassica rapaBra034592
ORTHOMCL3254(13 genes,8 taxa):Brassica rapaBra036972
ORTHOMCL3254(13 genes,8 taxa):Vitis viniferaGSVIVT01000159001
ORTHOMCL3254(13 genes,8 taxa):Vitis viniferaGSVIVT01037875001
ORTHOMCL3254(13 genes,8 taxa):Oryza sativaOs03t0761100-01
ORTHOMCL3254(13 genes,8 taxa):Oryza sativaOs12t0580900-01
ORTHOMCL3254(13 genes,8 taxa):Populus trichocarpaPOPTR_0001s30440.1
ORTHOMCL3254(13 genes,8 taxa):Populus trichocarpaPOPTR_0009s09470.1
ORTHOMCL3254(13 genes,8 taxa):Sorghum bicolorSb01g007340.1
ORTHOMCL3254(13 genes,8 taxa):Carica papayaevm.TU.supercontig_200.4
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:42916414..46841317 (+)A.thalianaChr4:12192136..16371430 (+)504
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:46392159..46839490 (+)B.rapaA08:8423071..8917377 (+)40
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G339201626066316262981Chr4Subgenome_I649
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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