Basic Information
Gene Model:Bol033841
Gene Family:Transcription Factor Families
Chromosome:C07
Scaffold:Scaffold000041
Sequence:
 | 
Gene Structure
Nucleotide Length:1594 bp
Transcript Length:1053 bp
Protein Length:350 aa
Strand:-
Location:C07: 46725259 : 46726852
Gene CDSs(5): 1-81 | 173-238 | 362-427 | 575-865 | 1046-1594 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00010HLH 273 320 2.3e-06IPR001092Basic helix-loop-helix dimerisation region bHLH
Segsegseg 280 293 NANot foundNot found
Segsegseg 67 102 NANot foundNot found
Segsegseg 202 213 NANot foundNot found
Segsegseg 36 46 NANot foundNot found
HMMSmartSM00353no description 276 325 4.1e-11IPR001092Basic helix-loop-helix dimerisation region bHLH
ProfileScanPS50888HLH 262 320 11.847IPR001092Basic helix-loop-helix dimerisation region bHLH
superfamilySSF47459HLH, helix-loop-heli 266 344 1e-12IPR011598Helix-loop-helix DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q84WK01e-164BH085_ARATH Transcription factor bHLH85 OS=Arabidopsis thaliana GN=BHLH85 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9HMZ02e-51B9HMZ0_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_767688 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL8285(9 genes,7 taxa):Arabidopsis thalianaAT4G33880.1
ORTHOMCL8285(9 genes,7 taxa):Brassica oleraceaBol033841
ORTHOMCL8285(9 genes,7 taxa):Brassica rapaBra036969
ORTHOMCL8285(9 genes,7 taxa):Vitis viniferaGSVIVT01037846001
ORTHOMCL8285(9 genes,7 taxa):Populus trichocarpaPOPTR_0001s30150.1
ORTHOMCL8285(9 genes,7 taxa):Populus trichocarpaPOPTR_0009s09210.1
ORTHOMCL8285(9 genes,7 taxa):Sorghum bicolorSb01g014580.1
ORTHOMCL8285(9 genes,7 taxa):Sorghum bicolorSb08g019780.1
ORTHOMCL8285(9 genes,7 taxa):Carica papayaevm.TU.supercontig_106.55
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:42916414..46841317 (+)A.thalianaChr4:12192136..16371430 (+)504
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:46392159..46839490 (+)B.rapaA08:8423071..8917377 (+)40
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G338801623936316241137Chr4Subgenome_I649
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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