Basic Information
Gene Model:Bol033810
Gene Family:Transcription Factor Families
Chromosome:C07
Scaffold:Scaffold000041
Sequence:
 | 
Gene Structure
Nucleotide Length:4156 bp
Transcript Length:1842 bp
Protein Length:613 aa
Strand:-
Location:C07: 46548776 : 46552931
Gene CDSs(11): 1-285 | 394-521 | 780-1413 | 2195-2272 | 2370-2405 | 2575-2637 | 2758-2817 | 3018-3068 | 3178-3252 | 3635-3697 | 3788-4156 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50863B3 250 344 12.689IPR003340Transcriptional factor B3
ProfileScanPS50863B3 504 602 13.056IPR003340Transcriptional factor B3
HMMPfamPF02362B3 504 604 9.8e-18IPR003340Transcriptional factor B3
HMMPfamPF02362B3 267 346 2.4e-18IPR003340Transcriptional factor B3
HMMPfamPF04278Tic22 1 268 2.1e-144IPR007378Tic22-like
Coilcoilcoiled-coil 114 135 NANot foundNot found
Gene3DG3DSA:2.40.330.10no description 242 346 7.7e-19Not foundNot found
HMMTigrTIGR009953a0901s06TIC22: chlo 1 269 2.8e-161IPR005692Chloroplast protein import component Tic22
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q8RYD11e-111REM16_ARATH B3 domain-containing protein REM16 OS=Arabidopsis thaliana GN=REM16 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9SZB21e-131Q9SZB2_ARATH Tic22-like protein OS=Arabidopsis thaliana GN=F17M5.110 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL8281(9 genes,7 taxa):Arabidopsis thalianaAT4G33280.1
ORTHOMCL8281(9 genes,7 taxa):Arabidopsis thalianaAT4G33350.1
ORTHOMCL8281(9 genes,7 taxa):Brassica oleraceaBol033810
ORTHOMCL8281(9 genes,7 taxa):Brassica rapaBra011434
ORTHOMCL8281(9 genes,7 taxa):Brassica rapaBra037010
ORTHOMCL8281(9 genes,7 taxa):Vitis viniferaGSVIVT01009503001
ORTHOMCL8281(9 genes,7 taxa):Populus trichocarpaPOPTR_0002s12830.1
ORTHOMCL8281(9 genes,7 taxa):Sorghum bicolorSb10g007160.1
ORTHOMCL8281(9 genes,7 taxa):Carica papayaevm.TU.supercontig_49.11
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:42916414..46841317 (+)A.thalianaChr4:12192136..16371430 (+)504
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:45881959..46569669 (+)B.rapaA09:14893952..15555066 (-)22
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G333501606454816066736Chr4Subgenome_I649
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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