Basic Information
Gene Model:Bol033793
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000041
Sequence:
 | 
Gene Structure
Nucleotide Length:1516 bp
Transcript Length:981 bp
Protein Length:326 aa
Strand:-
Location:C07: 46451121 : 46452636
Gene CDSs(5): 1-195 | 417-640 | 727-844 | 969-1223 | 1328-1516 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00481PP2C 41 276 1.8e-34IPR014045Protein phosphatase 2C, N-terminal
Segsegseg 278 296 NANot foundNot found
Gene3DG3DSA:3.60.40.10no description 44 320 6.1e-54IPR001932Protein phosphatase 2C-related
superfamilySSF81606Protein serine/threo 21 317 1.1e-54IPR001932Protein phosphatase 2C-related
HMMSmartSM00331no description 54 316 0.0062IPR001932Protein phosphatase 2C-related
HMMSmartSM00332no description 35 314 2.4e-71IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832PROTEIN PHOSPHATASE 44 326 1.6e-94IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF94PROTEIN PHOSPHATASE 44 326 1.6e-94Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
Swiss-Prot
Best HitE_value Description
O826371e-165P2C61_ARATH Probable protein phosphatase 2C 61 OS=Arabidopsis thaliana GN=At4g32950 PE=2 SV=1
TrEMBL
Best HitE_value Description
A7P4H74e-87A7P4H7_VITVI Chromosome chr4 scaffold_6, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00032157001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL19036(3 genes,3 taxa):Arabidopsis thalianaAT4G32950.1
ORTHOMCL19036(3 genes,3 taxa):Brassica oleraceaBol033793
ORTHOMCL19036(3 genes,3 taxa):Brassica rapaBra037033
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:42916414..46841317 (+)A.thalianaChr4:12192136..16371430 (+)504
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:45881959..46569669 (+)B.rapaA09:14893952..15555066 (-)22
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G329501590444415906010Chr4Subgenome_I649
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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