Basic Information
Gene Model:Bol033786
Gene Family:Transcription Factor Families
Chromosome:C07
Scaffold:Scaffold000041
Sequence:
 | 
Gene Structure
Nucleotide Length:687 bp
Transcript Length:687 bp
Protein Length:228 aa
Strand:+
Location:C07: 46413298 : 46413984
Gene CDSs(1): 1-687 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.30.730.10no description 19 80 6.8e-22IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMPfamPF00847AP2 19 70 5.7e-19IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 19 80 2.9e-22IPR016177DNA-binding, integrase-type
HMMSmartSM00380no description 20 83 3.6e-36IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Segsegseg 126 155 NANot foundNot found
ProfileScanPS51032AP2_ERF 20 77 22.800IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9M0809e-75ERF43_ARATH Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana GN=ERF043 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9RRY37e-45B9RRY3_RICCO Transcriptional factor TINY, putative OS=Ricinus communis GN=RCOM_0799320 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL13304(6 genes,3 taxa):Brassica oleraceaBol017868
ORTHOMCL13304(6 genes,3 taxa):Brassica oleraceaBol033786
ORTHOMCL13304(6 genes,3 taxa):Brassica rapaBra011383
ORTHOMCL13304(6 genes,3 taxa):Brassica rapaBra037041
ORTHOMCL13304(6 genes,3 taxa):Populus trichocarpaPOPTR_0006s17670.1
ORTHOMCL13304(6 genes,3 taxa):Populus trichocarpaPOPTR_0018s09270.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:42916414..46841317 (+)A.thalianaChr4:12192136..16371430 (+)504
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:45881959..46569669 (+)B.rapaA09:14893952..15555066 (-)22
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G328001581952415820871Chr4Subgenome_I649
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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