Basic Information
Gene Model:Bol033759
Gene Family:Transcription Factor Families
Chromosome:C07
Scaffold:Scaffold000041
Sequence:
 | 
Gene Structure
Nucleotide Length:3987 bp
Transcript Length:2208 bp
Protein Length:735 aa
Strand:+
Location:C07: 46260077 : 46264063
Gene CDSs(11): 1-119 | 221-302 | 648-1162 | 1254-1350 | 1417-1591 | 2108-2184 | 2268-2585 | 2678-2727 | 3044-3157 | 3260-3327 | 3395-3987 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS51050ZF_CW 477 527 14.874IPR011124Zinc finger, CW-type
ProfileScanPS50863B3 248 349 11.053IPR003340Transcriptional factor B3
Segsegseg 382 393 NANot foundNot found
Segsegseg 552 563 NANot foundNot found
HMMPantherPTHR23336:SF2SUBFAMILY NOT NAMED 483 533 3.7e-07Not foundNot found
HMMPantherPTHR23336ZINC FINGER CW-TYPE 483 533 3.7e-07Not foundNot found
Gene3DG3DSA:2.40.330.10no description 235 362 9.6e-33Not foundNot found
HMMPfamPF07496zf-CW 481 526 3.1e-18IPR011124Zinc finger, CW-type
HMMPfamPF02362B3 247 350 8.9e-27IPR003340Transcriptional factor B3
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
Q5CCK40.0VAL2_ARATH B3 domain-containing transcription repressor VAL2 OS=Arabidopsis thaliana GN=VAL2 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9IGT00.0B9IGT0_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_577177 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1009(20 genes,8 taxa):Arabidopsis thalianaAT2G30470.1
ORTHOMCL1009(20 genes,8 taxa):Arabidopsis thalianaAT4G32010.1
ORTHOMCL1009(20 genes,8 taxa):Brassica oleraceaBol004607
ORTHOMCL1009(20 genes,8 taxa):Brassica oleraceaBol006705
ORTHOMCL1009(20 genes,8 taxa):Brassica oleraceaBol033346
ORTHOMCL1009(20 genes,8 taxa):Brassica oleraceaBol033759
ORTHOMCL1009(20 genes,8 taxa):Brassica rapaBra018313
ORTHOMCL1009(20 genes,8 taxa):Brassica rapaBra021635
ORTHOMCL1009(20 genes,8 taxa):Brassica rapaBra022801
ORTHOMCL1009(20 genes,8 taxa):Brassica rapaBra023968
ORTHOMCL1009(20 genes,8 taxa):Vitis viniferaGSVIVT01024559001
ORTHOMCL1009(20 genes,8 taxa):Vitis viniferaGSVIVT01030182001
ORTHOMCL1009(20 genes,8 taxa):Oryza sativaOs07t0679700-01
ORTHOMCL1009(20 genes,8 taxa):Populus trichocarpaPOPTR_0006s10880.1
ORTHOMCL1009(20 genes,8 taxa):Populus trichocarpaPOPTR_0013s15330.1
ORTHOMCL1009(20 genes,8 taxa):Populus trichocarpaPOPTR_0016s14350.1
ORTHOMCL1009(20 genes,8 taxa):Populus trichocarpaPOPTR_0019s15070.1
ORTHOMCL1009(20 genes,8 taxa):Sorghum bicolorSb02g043000.1
ORTHOMCL1009(20 genes,8 taxa):Carica papayaevm.TU.supercontig_0.83
ORTHOMCL1009(20 genes,8 taxa):Carica papayaevm.TU.supercontig_2.279
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:42916414..46841317 (+)A.thalianaChr4:12192136..16371430 (+)504
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:45881959..46569669 (+)B.rapaA09:14893952..15555066 (-)22
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G320101547952415485353Chr4Subgenome_I649
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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