Basic Information
Gene Model:Bol033755
Gene Family:Transcription Factor Families
Chromosome:C07
Scaffold:Scaffold000041
Sequence:
 | 
Gene Structure
Nucleotide Length:2375 bp
Transcript Length:1572 bp
Protein Length:523 aa
Strand:-
Location:C07: 46246124 : 46248498
Gene CDSs(6): 1-78 | 204-974 | 1230-1306 | 1393-1758 | 1845-1997 | 2249-2375 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS51294HTH_MYB 189 248 14.382IPR017930Myb-type HTH DNA-binding domain
ProfileScanPS50110RESPONSE_REGULATORY 18 133 33.735IPR001789Signal transduction response regulator, receiver region
HMMPantherPTHR23283SENSOR HISTIDINE KIN 16 137 1e-18Not foundNot found
HMMPantherPTHR23283:SF40TWO-COMPONENT SENSOR 16 137 1e-18Not foundNot found
HMMTigrTIGR01557myb_SHAQKYF: myb-lik 192 247 9.5e-29IPR006447Myb-like DNA-binding region, SHAQKYF class
superfamilySSF52172CheY-like 14 134 1.3e-36IPR011006CheY-like
superfamilySSF46689Homeodomain-like 188 251 4e-20IPR009057Homeodomain-like
HMMPfamPF00249Myb_DNA-binding 194 244 4.4e-09IPR014778Myb, DNA-binding
HMMPfamPF00072Response_reg 19 130 1.6e-32IPR001789Signal transduction response regulator, receiver region
Segsegseg 171 186 NANot foundNot found
HMMPIRPIRSF036392Response regulator, 1 521 5.6e-202IPR017053Response regulator, plant B-type
HMMSmartSM00448no description 17 129 2.1e-34IPR001789Signal transduction response regulator, receiver region
Gene3DG3DSA:3.40.50.2300no description 17 169 9.3e-31Not foundNot found
Gene3DG3DSA:1.10.10.60no description 188 251 1.8e-22IPR012287Homeodomain-related
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
O493970.0ARR10_ARATH Two-component response regulator ARR10 OS=Arabidopsis thaliana GN=ARR10 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q0WRZ40.0Q0WRZ4_ARATH Predicted protein OS=Arabidopsis thaliana GN=At4g31920 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL15794(4 genes,3 taxa):Arabidopsis thalianaAT4G31920.1
ORTHOMCL15794(4 genes,3 taxa):Brassica oleraceaBol017948
ORTHOMCL15794(4 genes,3 taxa):Brassica oleraceaBol033755
ORTHOMCL15794(4 genes,3 taxa):Brassica rapaBra023972
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:42916414..46841317 (+)A.thalianaChr4:12192136..16371430 (+)504
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:45881959..46569669 (+)B.rapaA09:14893952..15555066 (-)22
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G319201544411715446959Chr4Subgenome_I649
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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