Basic Information
Gene Model:Bol033750
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000041
Sequence:
 | 
Gene Structure
Nucleotide Length:1868 bp
Transcript Length:1059 bp
Protein Length:352 aa
Strand:-
Location:C07: 46199925 : 46201792
Gene CDSs(10): 1-180 | 281-335 | 424-476 | 555-631 | 706-829 | 924-1049 | 1178-1331 | 1408-1516 | 1594-1657 | 1752-1868 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR13832PROTEIN PHOSPHATASE 1 331 5.1e-168IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF91PROTEIN PHOSPHATASE 1 331 5.1e-168Not foundNot found
PatternScanPS01032PP2C 52 60 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
superfamilySSF81606Protein serine/threo 2 334 4.4e-85IPR001932Protein phosphatase 2C-related
HMMPfamPF00481PP2C 22 322 2.3e-78IPR014045Protein phosphatase 2C, N-terminal
HMMSmartSM00331no description 28 329 0.0096IPR001932Protein phosphatase 2C-related
HMMSmartSM00332no description 13 327 1.4e-102IPR001932Protein phosphatase 2C-related
Gene3DG3DSA:3.60.40.10no description 1 333 1.6e-85IPR001932Protein phosphatase 2C-related
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
Q9SZ530.0P2C60_ARATH Probable protein phosphatase 2C 60 OS=Arabidopsis thaliana GN=At4g31860 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9RNU71e-177B9RNU7_RICCO Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_0920800 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4052(12 genes,8 taxa):Arabidopsis thalianaAT4G31860.1
ORTHOMCL4052(12 genes,8 taxa):Brassica oleraceaBol033750
ORTHOMCL4052(12 genes,8 taxa):Brassica rapaBra023979
ORTHOMCL4052(12 genes,8 taxa):Vitis viniferaGSVIVT01035977001
ORTHOMCL4052(12 genes,8 taxa):Oryza sativaOs02t0180000-01
ORTHOMCL4052(12 genes,8 taxa):Oryza sativaOs06t0651600-01
ORTHOMCL4052(12 genes,8 taxa):Populus trichocarpaPOPTR_0006s28090.1
ORTHOMCL4052(12 genes,8 taxa):Populus trichocarpaPOPTR_0018s02670.1
ORTHOMCL4052(12 genes,8 taxa):Populus trichocarpaPOPTR_0018s02680.1
ORTHOMCL4052(12 genes,8 taxa):Sorghum bicolorSb04g005450.1
ORTHOMCL4052(12 genes,8 taxa):Sorghum bicolorSb10g025800.1
ORTHOMCL4052(12 genes,8 taxa):Carica papayaevm.TU.supercontig_148.20
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:42916414..46841317 (+)A.thalianaChr4:12192136..16371430 (+)504
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:45881959..46569669 (+)B.rapaA09:14893952..15555066 (-)22
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G318601540643915409000Chr4Subgenome_I649
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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