Basic Information
Gene Model:Bol033741
Gene Family:Transcription Factor Families
Chromosome:C07
Scaffold:Scaffold000041
Sequence:
 | 
Gene Structure
Nucleotide Length:1697 bp
Transcript Length:1440 bp
Protein Length:479 aa
Strand:-
Location:C07: 46133273 : 46134969
Gene CDSs(4): 1-342 | 430-669 | 746-1102 | 1197-1697 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:2.40.330.10no description 1 79 1.9e-09Not foundNot found
Segsegseg 86 121 NANot foundNot found
ProfileScanPS50863B3 152 248 13.394IPR003340Transcriptional factor B3
ProfileScanPS50863B3 271 367 8.797IPR003340Transcriptional factor B3
ProfileScanPS50863B3 1 77 12.393IPR003340Transcriptional factor B3
Coilcoilcoiled-coil 452 473 NANot foundNot found
HMMPfamPF02362B3 158 249 1.3e-27IPR003340Transcriptional factor B3
HMMPfamPF02362B3 271 367 3e-15IPR003340Transcriptional factor B3
HMMPfamPF02362B3 1 79 5.4e-15IPR003340Transcriptional factor B3
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9SB791e-149REM4_ARATH Putative B3 domain-containing protein REM4 OS=Arabidopsis thaliana GN=REM4 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9RNQ08e-31B9RNQ0_RICCO DNA binding protein, putative OS=Ricinus communis GN=RCOM_0919630 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1299(18 genes,8 taxa):Arabidopsis thalianaAT2G24640.1
ORTHOMCL1299(18 genes,8 taxa):Arabidopsis thalianaAT4G31630.1
ORTHOMCL1299(18 genes,8 taxa):Arabidopsis thalianaAT4G31670.1
ORTHOMCL1299(18 genes,8 taxa):Brassica oleraceaBol017970
ORTHOMCL1299(18 genes,8 taxa):Brassica oleraceaBol033741
ORTHOMCL1299(18 genes,8 taxa):Brassica oleraceaBol041906
ORTHOMCL1299(18 genes,8 taxa):Brassica oleraceaBol045769
ORTHOMCL1299(18 genes,8 taxa):Brassica rapaBra007837
ORTHOMCL1299(18 genes,8 taxa):Brassica rapaBra011288
ORTHOMCL1299(18 genes,8 taxa):Brassica rapaBra011290
ORTHOMCL1299(18 genes,8 taxa):Brassica rapaBra023991
ORTHOMCL1299(18 genes,8 taxa):Brassica rapaBra032080
ORTHOMCL1299(18 genes,8 taxa):Vitis viniferaGSVIVT01033166001
ORTHOMCL1299(18 genes,8 taxa):Oryza sativaOs06t0654000-01
ORTHOMCL1299(18 genes,8 taxa):Populus trichocarpaPOPTR_0006s28540.1
ORTHOMCL1299(18 genes,8 taxa):Populus trichocarpaPOPTR_0018s03350.1
ORTHOMCL1299(18 genes,8 taxa):Sorghum bicolorSb10g026010.1
ORTHOMCL1299(18 genes,8 taxa):Carica papayaevm.TU.supercontig_23.37
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:42916414..46841317 (+)A.thalianaChr4:12192136..16371430 (+)504
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:45881959..46569669 (+)B.rapaA09:14893952..15555066 (-)22
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G316301532534315327220Chr4Subgenome_I649
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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