Basic Information
Gene Model:Bol033739
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000041
Sequence:
 | 
Gene Structure
Nucleotide Length:2338 bp
Transcript Length:2055 bp
Protein Length:684 aa
Strand:-
Location:C07: 46122359 : 46124696
Gene CDSs(5): 1-636 | 708-821 | 895-1185 | 1263-1571 | 1634-2338 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.90.550.10no description 222 443 1.4e-14Not foundNot found
Segsegseg 639 649 NANot foundNot found
Segsegseg 612 633 NANot foundNot found
Segsegseg 482 494 NANot foundNot found
HMMPfamPF00535Glycos_transf_2 313 400 6.4e-05IPR001173Glycosyl transferase, family 2
superfamilySSF53448Nucleotide-diphospho 222 443 9.3e-24Not foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9SB750.0CSLC5_ARATH Probable xyloglucan glycosyltransferase 5 OS=Arabidopsis thaliana GN=CSLC5 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9ILD50.0B9ILD5_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_578365 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL190(44 genes,8 taxa):Arabidopsis thalianaAT2G24630.1
ORTHOMCL190(44 genes,8 taxa):Arabidopsis thalianaAT3G07330.1
ORTHOMCL190(44 genes,8 taxa):Arabidopsis thalianaAT3G28180.1
ORTHOMCL190(44 genes,8 taxa):Arabidopsis thalianaAT4G07960.1
ORTHOMCL190(44 genes,8 taxa):Arabidopsis thalianaAT4G31590.1
ORTHOMCL190(44 genes,8 taxa):Brassica oleraceaBol015100
ORTHOMCL190(44 genes,8 taxa):Brassica oleraceaBol017982
ORTHOMCL190(44 genes,8 taxa):Brassica oleraceaBol031211
ORTHOMCL190(44 genes,8 taxa):Brassica oleraceaBol032239
ORTHOMCL190(44 genes,8 taxa):Brassica oleraceaBol033739
ORTHOMCL190(44 genes,8 taxa):Brassica oleraceaBol033997
ORTHOMCL190(44 genes,8 taxa):Brassica oleraceaBol042957
ORTHOMCL190(44 genes,8 taxa):Brassica oleraceaBol045770
ORTHOMCL190(44 genes,8 taxa):Brassica rapaBra000635
ORTHOMCL190(44 genes,8 taxa):Brassica rapaBra001246
ORTHOMCL190(44 genes,8 taxa):Brassica rapaBra007838
ORTHOMCL190(44 genes,8 taxa):Brassica rapaBra011284
ORTHOMCL190(44 genes,8 taxa):Brassica rapaBra023993
ORTHOMCL190(44 genes,8 taxa):Brassica rapaBra025323
ORTHOMCL190(44 genes,8 taxa):Brassica rapaBra039061
ORTHOMCL190(44 genes,8 taxa):Vitis viniferaGSVIVT01002010001
ORTHOMCL190(44 genes,8 taxa):Vitis viniferaGSVIVT01009290001
ORTHOMCL190(44 genes,8 taxa):Vitis viniferaGSVIVT01016135001
ORTHOMCL190(44 genes,8 taxa):Vitis viniferaGSVIVT01032523001
ORTHOMCL190(44 genes,8 taxa):Vitis viniferaGSVIVT01033168001
ORTHOMCL190(44 genes,8 taxa):Oryza sativaOs03t0770800-01
ORTHOMCL190(44 genes,8 taxa):Oryza sativaOs07t0124750-00
ORTHOMCL190(44 genes,8 taxa):Oryza sativaOs08t0253800-01
ORTHOMCL190(44 genes,8 taxa):Oryza sativaOs09t0428000-00
ORTHOMCL190(44 genes,8 taxa):Populus trichocarpaPOPTR_0002s11490.1
ORTHOMCL190(44 genes,8 taxa):Populus trichocarpaPOPTR_0002s24980.1
ORTHOMCL190(44 genes,8 taxa):Populus trichocarpaPOPTR_0005s19060.1
ORTHOMCL190(44 genes,8 taxa):Populus trichocarpaPOPTR_0006s28560.1
ORTHOMCL190(44 genes,8 taxa):Populus trichocarpaPOPTR_0014s18950.1
ORTHOMCL190(44 genes,8 taxa):Populus trichocarpaPOPTR_0018s03370.1
ORTHOMCL190(44 genes,8 taxa):Sorghum bicolorSb01g006820.1
ORTHOMCL190(44 genes,8 taxa):Sorghum bicolorSb02g002090.1
ORTHOMCL190(44 genes,8 taxa):Sorghum bicolorSb03g035660.1
ORTHOMCL190(44 genes,8 taxa):Sorghum bicolorSb07g007890.1
ORTHOMCL190(44 genes,8 taxa):Sorghum bicolorSb09g025260.1
ORTHOMCL190(44 genes,8 taxa):Carica papayaevm.TU.supercontig_160.30
ORTHOMCL190(44 genes,8 taxa):Carica papayaevm.TU.supercontig_23.34
ORTHOMCL190(44 genes,8 taxa):Carica papayaevm.TU.supercontig_286.3
ORTHOMCL190(44 genes,8 taxa):Carica papayaevm.TU.supercontig_8.100
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:42916414..46841317 (+)A.thalianaChr4:12192136..16371430 (+)504
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:45881959..46569669 (+)B.rapaA09:14893952..15555066 (-)22
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G315901530950615312591Chr4Subgenome_I649
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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