Basic Information
Gene Model:Bol033718
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000041
Sequence:
 | 
Gene Structure
Nucleotide Length:573 bp
Transcript Length:573 bp
Protein Length:190 aa
Strand:-
Location:C07: 46010247 : 46010819
Gene CDSs(1): 1-573 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF02519Auxin_inducible 83 145 7.9e-32IPR003676Auxin responsive SAUR protein
Segsegseg 40 53 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
P330812e-10AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1
TrEMBL
Best HitE_value Description
O495812e-81O49581_ARATH Auxin induced like-protein OS=Arabidopsis thaliana GN=AT4g31320 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL26673(2 genes,2 taxa):Brassica oleraceaBol033718
ORTHOMCL26673(2 genes,2 taxa):Brassica rapaBra024013
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:42916414..46841317 (+)A.thalianaChr4:12192136..16371430 (+)504
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:45881959..46569669 (+)B.rapaA09:14893952..15555066 (-)22
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G313201519399315194562Chr4Subgenome_I649
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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