Basic Information
Gene Model:Bol033665
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000041
Sequence:
 | 
Gene Structure
Nucleotide Length:1645 bp
Transcript Length:1107 bp
Protein Length:368 aa
Strand:+
Location:C07: 45697355 : 45698999
Gene CDSs(7): 1-179 | 275-343 | 443-559 | 648-888 | 984-1142 | 1219-1370 | 1456-1645 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00892DUF6 193 322 1e-09IPR000620Protein of unknown function DUF6, transmembrane
HMMPfamPF00892DUF6 18 146 2.7e-09IPR000620Protein of unknown function DUF6, transmembrane
superfamilySSF103481Multidrug resistance 218 329 1.9e-09Not foundNot found
superfamilySSF103481Multidrug resistance 43 147 6.4e-08Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1633e-545NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9M0B81e-154Q9M0B8_ARATH Nodulin-like protein OS=Arabidopsis thaliana GN=AT4g30420 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL20121(3 genes,2 taxa):Brassica oleraceaBol033661
ORTHOMCL20121(3 genes,2 taxa):Brassica oleraceaBol033665
ORTHOMCL20121(3 genes,2 taxa):Brassica rapaBra024077
Tandem Duplication
ClusterGene Num.Gene List
Cluster_12522Bol033665 Bol033666 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:42916414..46841317 (+)A.thalianaChr4:12192136..16371430 (+)504
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:45245680..45977442 (+)B.rapaA10:9289494..9950587 (-)11
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo