Basic Information
Gene Model:Bol033646
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000041
Sequence:
 | 
Gene Structure
Nucleotide Length:11197 bp
Transcript Length:2013 bp
Protein Length:670 aa
Strand:-
Location:C07: 45537367 : 45548563
Gene CDSs(3): 1-1907 | 2737-2805 | 11161-11197 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00041fn3 356 440 0.0015IPR003961Fibronectin, type III
ProfileScanPS50853FN3 355 450 12.346IPR003961Fibronectin, type III
HMMPantherPTHR21736VERNALIZATION-INSENS 30 497 1.2e-217Not foundNot found
HMMPantherPTHR21736:SF13VERNALIZATION-INSENS 30 497 1.2e-217Not foundNot found
Gene3DG3DSA:2.60.40.30no description 357 450 0.00028IPR008957Fibronectin, type III-like fold
HMMSmartSM00060no description 356 442 0.0015IPR003961Fibronectin, type III
Segsegseg 28 52 NANot foundNot found
Segsegseg 451 463 NANot foundNot found
superfamilySSF49265Fibronectin type III 356 452 7.6e-09IPR008957Fibronectin, type III-like fold
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9FIE31e-129VIN3_ARATH Protein VERNALIZATION INSENSITIVE 3 OS=Arabidopsis thaliana GN=VIN3 PE=2 SV=2
TrEMBL
Best HitE_value Description
Q9SUM40.0Q9SUM4_ARATH Putative uncharacterized protein AT4g30200 OS=Arabidopsis thaliana GN=VIL2 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1834(16 genes,8 taxa):Arabidopsis thalianaAT4G30200.2
ORTHOMCL1834(16 genes,8 taxa):Brassica oleraceaBol013001
ORTHOMCL1834(16 genes,8 taxa):Brassica oleraceaBol020979
ORTHOMCL1834(16 genes,8 taxa):Brassica oleraceaBol033646
ORTHOMCL1834(16 genes,8 taxa):Brassica rapaBra010297
ORTHOMCL1834(16 genes,8 taxa):Brassica rapaBra011173
ORTHOMCL1834(16 genes,8 taxa):Brassica rapaBra024097
ORTHOMCL1834(16 genes,8 taxa):Vitis viniferaGSVIVT01029220001
ORTHOMCL1834(16 genes,8 taxa):Oryza sativaOs02t0152500-01
ORTHOMCL1834(16 genes,8 taxa):Oryza sativaOs08t0220600-01
ORTHOMCL1834(16 genes,8 taxa):Populus trichocarpaPOPTR_0006s18340.1
ORTHOMCL1834(16 genes,8 taxa):Populus trichocarpaPOPTR_0006s18340.2
ORTHOMCL1834(16 genes,8 taxa):Populus trichocarpaPOPTR_0018s09890.1
ORTHOMCL1834(16 genes,8 taxa):Sorghum bicolorSb04g003700.1
ORTHOMCL1834(16 genes,8 taxa):Sorghum bicolorSb07g006110.1
ORTHOMCL1834(16 genes,8 taxa):Carica papayaevm.TU.supercontig_1021.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:42916414..46841317 (+)A.thalianaChr4:12192136..16371430 (+)504
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:45245680..45977442 (+)B.rapaA10:9289494..9950587 (-)11
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G302001478663314790503Chr4Subgenome_I649
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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