Basic Information
Gene Model:Bol033635
Gene Family:Transcription Factor Families
Chromosome:C07
Scaffold:Scaffold000041
Sequence:
 | 
Gene Structure
Nucleotide Length:2261 bp
Transcript Length:1965 bp
Protein Length:654 aa
Strand:-
Location:C07: 45446556 : 45448816
Gene CDSs(3): 1-70 | 166-983 | 1185-2261 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50962IAA_ARF 569 647 24.499IPR011525Aux/IAA-ARF-dimerisation
ProfileScanPS50863B3 117 219 13.267IPR003340Transcriptional factor B3
HMMPfamPF06507Auxin_resp 276 359 3e-50IPR010525Auxin response factor
HMMPfamPF02362B3 116 221 2.9e-33IPR003340Transcriptional factor B3
Segsegseg 468 483 NANot foundNot found
Gene3DG3DSA:2.40.330.10no description 104 233 8.1e-40Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0005634 Cellular Component nucleus
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0009725 Biological Process response to hormone stimulus
GO:0045449 Biological Process regulation of transcription
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
Q93YR90.0ARFP_ARATH Auxin response factor 16 OS=Arabidopsis thaliana GN=ARF16 PE=2 SV=1
TrEMBL
Best HitE_value Description
A7PI390.0A7PI39_VITVI Chromosome chr13 scaffold_17, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00018183001 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL494(27 genes,8 taxa):Arabidopsis thalianaAT2G28350.1
ORTHOMCL494(27 genes,8 taxa):Arabidopsis thalianaAT4G30080.1
ORTHOMCL494(27 genes,8 taxa):Brassica oleraceaBol013391
ORTHOMCL494(27 genes,8 taxa):Brassica oleraceaBol020966
ORTHOMCL494(27 genes,8 taxa):Brassica oleraceaBol033635
ORTHOMCL494(27 genes,8 taxa):Brassica rapaBra011162
ORTHOMCL494(27 genes,8 taxa):Brassica rapaBra011955
ORTHOMCL494(27 genes,8 taxa):Brassica rapaBra024109
ORTHOMCL494(27 genes,8 taxa):Vitis viniferaGSVIVT01016266001
ORTHOMCL494(27 genes,8 taxa):Vitis viniferaGSVIVT01025198001
ORTHOMCL494(27 genes,8 taxa):Vitis viniferaGSVIVT01025691001
ORTHOMCL494(27 genes,8 taxa):Oryza sativaOs02t0628600-01
ORTHOMCL494(27 genes,8 taxa):Oryza sativaOs06t0685700-01
ORTHOMCL494(27 genes,8 taxa):Oryza sativaOs10t0479900-01
ORTHOMCL494(27 genes,8 taxa):Populus trichocarpaPOPTR_0004s22130.1
ORTHOMCL494(27 genes,8 taxa):Populus trichocarpaPOPTR_0006s12930.1
ORTHOMCL494(27 genes,8 taxa):Populus trichocarpaPOPTR_0008s03890.1
ORTHOMCL494(27 genes,8 taxa):Populus trichocarpaPOPTR_0009s02020.1
ORTHOMCL494(27 genes,8 taxa):Populus trichocarpaPOPTR_0010s23000.1
ORTHOMCL494(27 genes,8 taxa):Populus trichocarpaPOPTR_0016s09150.1
ORTHOMCL494(27 genes,8 taxa):Populus trichocarpaPOPTR_0848s00200.1
ORTHOMCL494(27 genes,8 taxa):Sorghum bicolorSb01g019130.1
ORTHOMCL494(27 genes,8 taxa):Sorghum bicolorSb04g026610.1
ORTHOMCL494(27 genes,8 taxa):Sorghum bicolorSb06g022810.1
ORTHOMCL494(27 genes,8 taxa):Sorghum bicolorSb10g027790.1
ORTHOMCL494(27 genes,8 taxa):Carica papayaevm.TU.supercontig_53.86
ORTHOMCL494(27 genes,8 taxa):Carica papayaevm.TU.supercontig_65.4
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:42916414..46841317 (+)A.thalianaChr4:12192136..16371430 (+)504
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:45245680..45977442 (+)B.rapaA10:9289494..9950587 (-)11
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G300801470320114706336Chr4Subgenome_I649
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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