Basic Information
Gene Model:Bol033633
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000041
Sequence:
 | 
Gene Structure
Nucleotide Length:652 bp
Transcript Length:363 bp
Protein Length:120 aa
Strand:+
Location:C07: 45424017 : 45424668
Gene CDSs(2): 1-58 | 348-652 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
BlastProDomPD629468LCR58_ARATH_P82772; 1 71 3e-16Not foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
P827723e-33DF180_ARATH Putative defensin-like protein 180 OS=Arabidopsis thaliana GN=LCR58 PE=3 SV=1
TrEMBL
Best HitE_value Description
Q8L8U01e-32Q8L8U0_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL10298(8 genes,5 taxa):Arabidopsis thalianaAT4G30070.1
ORTHOMCL10298(8 genes,5 taxa):Arabidopsis thalianaAT5G38317.1
ORTHOMCL10298(8 genes,5 taxa):Arabidopsis thalianaAT5G38330.1
ORTHOMCL10298(8 genes,5 taxa):Brassica oleraceaBol033633
ORTHOMCL10298(8 genes,5 taxa):Brassica oleraceaBol033634
ORTHOMCL10298(8 genes,5 taxa):Brassica rapaBra024110
ORTHOMCL10298(8 genes,5 taxa):Populus trichocarpaPOPTR_0018s13310.1
ORTHOMCL10298(8 genes,5 taxa):Carica papayaevm.TU.supercontig_95.26
Tandem Duplication
ClusterGene Num.Gene List
Cluster_12782Bol033633 Bol033634 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:42916414..46841317 (+)A.thalianaChr4:12192136..16371430 (+)504
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:45245680..45977442 (+)B.rapaA10:9289494..9950587 (-)11
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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