Basic Information
Gene Model:Bol033526
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000041
Sequence:
 | 
Gene Structure
Nucleotide Length:4102 bp
Transcript Length:1239 bp
Protein Length:412 aa
Strand:+
Location:C07: 44713153 : 44717254
Gene CDSs(7): 1-210 | 461-633 | 739-772 | 3061-3303 | 3379-3655 | 3730-3888 | 3960-4102 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR13832PROTEIN PHOSPHATASE 147 412 1.9e-103IPR015655Protein phosphatase 2C
HMMSmartSM00332no description 151 409 3.2e-87IPR001932Protein phosphatase 2C-related
HMMPfamPF00481PP2C 192 404 5.3e-62IPR014045Protein phosphatase 2C, N-terminal
HMMPfamPF00234Tryp_alpha_amyl 29 126 4.6e-14IPR003612Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor
Gene3DG3DSA:3.60.40.10no description 140 412 3.5e-66IPR001932Protein phosphatase 2C-related
Gene3DG3DSA:1.10.110.10no description 26 130 8.2e-13IPR013770Plant lipid transfer protein/hydrophobic protein, helical domain
Segsegseg 108 117 NANot foundNot found
Segsegseg 6 20 NANot foundNot found
superfamilySSF47699Bifunctional inhibit 26 130 4.9e-16IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage
superfamilySSF81606Protein serine/threo 158 412 1.7e-68IPR001932Protein phosphatase 2C-related
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0006869 Biological Process lipid transport
Swiss-Prot
Best HitE_value Description
Q93YW51e-144P2C58_ARATH Probable protein phosphatase 2C 58 OS=Arabidopsis thaliana GN=At4g28400 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9MYF61e-114B9MYF6_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_594652 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL26643(2 genes,2 taxa):Brassica oleraceaBol033526
ORTHOMCL26643(2 genes,2 taxa):Brassica rapaBra024205
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:42916414..46841317 (+)A.thalianaChr4:12192136..16371430 (+)504
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:43412797..46336729 (+)B.rapaA08:3942692..5662708 (-)127
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G284001404829214050335Chr4Subgenome_I649
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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