Basic Information
Gene Model:Bol033399
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000043
Sequence:
 | 
Gene Structure
Nucleotide Length:3038 bp
Transcript Length:1134 bp
Protein Length:377 aa
Strand:-
Location:C08: 7602020 : 7605057
Gene CDSs(7): 1-194 | 291-353 | 1626-1742 | 1955-2192 | 2320-2478 | 2583-2734 | 2828-3038 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00892DUF6 22 149 1.2e-14IPR000620Protein of unknown function DUF6, transmembrane
HMMPfamPF00892DUF6 195 324 1.2e-07IPR000620Protein of unknown function DUF6, transmembrane
superfamilySSF103481Multidrug resistance 47 162 2.3e-09Not foundNot found
superfamilySSF103481Multidrug resistance 227 329 2.1e-09Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1636e-555NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9LPF10.0Q9LPF1_ARATH T12C22.7 protein OS=Arabidopsis thaliana GN=At1g44800 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL11250(7 genes,4 taxa):Arabidopsis thalianaAT1G44800.1
ORTHOMCL11250(7 genes,4 taxa):Brassica oleraceaBol033399
ORTHOMCL11250(7 genes,4 taxa):Brassica oleraceaBol045205
ORTHOMCL11250(7 genes,4 taxa):Brassica rapaBra014029
ORTHOMCL11250(7 genes,4 taxa):Brassica rapaBra040619
ORTHOMCL11250(7 genes,4 taxa):Oryza sativaOs10t0210500-01
ORTHOMCL11250(7 genes,4 taxa):Oryza sativaOs10t0210500-02
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:7312430..8108538 (+)A.thalianaChr1:16764405..17090545 (+)13
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:6744135..8108538 (+)B.rapaA08:14146545..14791826 (+)25
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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