Basic Information
Gene Model:Bol033136
Gene Family:Not classificated
Chromosome:C02
Scaffold:Scaffold000045
Sequence:
 | 
Gene Structure
Nucleotide Length:2501 bp
Transcript Length:1092 bp
Protein Length:363 aa
Strand:+
Location:C02: 40198815 : 40201315
Gene CDSs(6): 1-172 | 653-804 | 1152-1551 | 1628-1744 | 1827-1889 | 2314-2501 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00892DUF6 20 153 2.1e-17IPR000620Protein of unknown function DUF6, transmembrane
HMMPfamPF00892DUF6 194 323 4.9e-09IPR000620Protein of unknown function DUF6, transmembrane
superfamilySSF103481Multidrug resistance 45 160 8e-10Not foundNot found
superfamilySSF103481Multidrug resistance 219 330 9e-11Not foundNot found
Segsegseg 189 199 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1638e-485NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9LI651e-176Q9LI65_ARATH Nodulin-like protein OS=Arabidopsis thaliana GN=At3g30340/T6J22_10 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1347(18 genes,7 taxa):Arabidopsis thalianaAT3G30340.1
ORTHOMCL1347(18 genes,7 taxa):Brassica oleraceaBol033136
ORTHOMCL1347(18 genes,7 taxa):Brassica oleraceaBol043048
ORTHOMCL1347(18 genes,7 taxa):Vitis viniferaGSVIVT01010463001
ORTHOMCL1347(18 genes,7 taxa):Vitis viniferaGSVIVT01010467001
ORTHOMCL1347(18 genes,7 taxa):Vitis viniferaGSVIVT01019717001
ORTHOMCL1347(18 genes,7 taxa):Oryza sativaOs02t0103500-00
ORTHOMCL1347(18 genes,7 taxa):Oryza sativaOs02t0103600-01
ORTHOMCL1347(18 genes,7 taxa):Oryza sativaOs04t0422300-01
ORTHOMCL1347(18 genes,7 taxa):Oryza sativaOs06t0109200-01
ORTHOMCL1347(18 genes,7 taxa):Populus trichocarpaPOPTR_0002s18350.1
ORTHOMCL1347(18 genes,7 taxa):Populus trichocarpaPOPTR_0011s15200.1
ORTHOMCL1347(18 genes,7 taxa):Populus trichocarpaPOPTR_0014s10410.1
ORTHOMCL1347(18 genes,7 taxa):Sorghum bicolorSb04g000470.1
ORTHOMCL1347(18 genes,7 taxa):Sorghum bicolorSb10g000710.1
ORTHOMCL1347(18 genes,7 taxa):Sorghum bicolorSb10g000830.1
ORTHOMCL1347(18 genes,7 taxa):Carica papayaevm.TU.supercontig_14.247
ORTHOMCL1347(18 genes,7 taxa):Carica papayaevm.TU.supercontig_62.60
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:39294134..41209105 (+)B.rapaA09:6946405..7492294 (-)41
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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