Basic Information
Gene Model:Bol033057
Gene Family:Transcription Factor Families
Chromosome:C02
Scaffold:Scaffold000045
Sequence:
 | 
Gene Structure
Nucleotide Length:3169 bp
Transcript Length:1341 bp
Protein Length:446 aa
Strand:+
Location:C02: 41075149 : 41078317
Gene CDSs(6): 1-117 | 203-727 | 2227-2303 | 2386-2748 | 2837-2989 | 3064-3169 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMTigrTIGR01557myb_SHAQKYF: myb-lik 185 239 3.3e-21IPR006447Myb-like DNA-binding region, SHAQKYF class
Coilcoilcoiled-coil 232 253 NANot foundNot found
ProfileScanPS50110RESPONSE_REGULATORY 11 126 18.187IPR001789Signal transduction response regulator, receiver region
HMMPantherPTHR23283SENSOR HISTIDINE KIN 8 130 2.3e-06Not foundNot found
Gene3DG3DSA:1.10.10.60no description 181 243 1.5e-15IPR012287Homeodomain-related
Gene3DG3DSA:3.40.50.2300no description 11 139 1.4e-12Not foundNot found
HMMPfamPF00249Myb_DNA-binding 187 236 1.9e-07IPR014778Myb, DNA-binding
HMMPfamPF00072Response_reg 29 123 1.6e-06IPR001789Signal transduction response regulator, receiver region
superfamilySSF52172CheY-like 7 127 5.2e-19IPR011006CheY-like
superfamilySSF46689Homeodomain-like 181 243 1.2e-13IPR009057Homeodomain-like
Segsegseg 395 406 NANot foundNot found
Segsegseg 136 148 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9FJ165e-75APRR4_ARATH Putative two-component response regulator-like APRR4 OS=Arabidopsis thaliana GN=APRR4 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9RZK53e-42B9RZK5_RICCO Sensor histidine kinase, putative OS=Ricinus communis GN=RCOM_0999330 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL19460(3 genes,3 taxa):Arabidopsis thalianaAT5G49240.1
ORTHOMCL19460(3 genes,3 taxa):Brassica oleraceaBol033057
ORTHOMCL19460(3 genes,3 taxa):Brassica rapaBra020652
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:40305538..41209105 (+)A.thalianaChr5:19366483..20058464 (+)59
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:39294134..41209105 (+)B.rapaA09:6946405..7492294 (-)41
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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