Basic Information
Gene Model:Bol033010
Gene Family:Protein Kinase Gene Families
Chromosome:C06
Scaffold:Scaffold000046
Sequence:
 | 
Gene Structure
Nucleotide Length:2831 bp
Transcript Length:1857 bp
Protein Length:618 aa
Strand:+
Location:C06: 4849617 : 4852447
Gene CDSs(7): 1-330 | 414-564 | 645-879 | 960-1170 | 1257-1396 | 1488-1601 | 2156-2831 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF56112Protein kinase-like 283 599 1.2e-78IPR011009Protein kinase-like domain
HMMPfamPF01657DUF26 189 226 2.2e-07IPR002902Protein of unknown function DUF26
HMMPfamPF00069Pkinase 294 492 1.4e-49IPR017442Serine/threonine-protein kinase-like domain
HMMPfamPF01657DUF26 81 132 2.7e-15IPR002902Protein of unknown function DUF26
HMMPantherPTHR23258SERINE-THREONINE PRO 81 617 4.4e-230Not foundNot found
HMMPantherPTHR23258:SF433RECEPTOR-LIKE SERINE 81 617 4.4e-230Not foundNot found
HMMSmartSM00219no description 294 570 4.5e-29IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 294 570 2.8e-31IPR002290Serine/threonine-protein kinase domain
Segsegseg 14 22 NANot foundNot found
Segsegseg 159 171 NANot foundNot found
Segsegseg 227 241 NANot foundNot found
ProfileScanPS50011PROTEIN_KINASE_DOM 294 577 38.025IPR000719Protein kinase, catalytic domain
Gene3DG3DSA:3.30.200.20no description 275 369 7.6e-22Not foundNot found
Gene3DG3DSA:1.10.510.10no description 372 572 3.9e-49Not foundNot found
PatternScanPS00108PROTEIN_KINASE_ST 415 427 NAIPR008271Serine/threonine-protein kinase, active site
PatternScanPS00107PROTEIN_KINASE_ATP 300 322 NAIPR017441Protein kinase, ATP binding site
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q9CAL30.0CRK2_ARATH Cysteine-rich receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=CRK2 PE=2 SV=1
TrEMBL
Best HitE_value Description
A7QP160.0A7QP16_VITVI Chromosome chr1 scaffold_135, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00002759001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G137904e-57K13417SERK4, BKK1--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List
Cluster_3393Bol033010 Bol033011 Bol033012 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:4201241..5347428 (-)A.thalianaChr1:26266609..26939106 (+)87
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:4201241..5223016 (+)B.rapaA09:19597984..20394745 (+)33
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G705202658472926587419Chr1Subgenome_III(LF)587
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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