Basic Information
Gene Model:Bol032985
Gene Family:Not classificated
Chromosome:C06
Scaffold:Scaffold000046
Sequence:
 | 
Gene Structure
Nucleotide Length:5392 bp
Transcript Length:1413 bp
Protein Length:470 aa
Strand:+
Location:C06: 5040933 : 5046324
Gene CDSs(9): 1-176 | 254-368 | 3316-3490 | 3584-3735 | 3818-3976 | 4072-4327 | 4413-4529 | 5037-5099 | 5193-5392 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 197 208 NANot foundNot found
HMMPfamPF00892DUF6 21 154 2.3e-06IPR000620Protein of unknown function DUF6, transmembrane
superfamilySSF103481Multidrug resistance 46 164 6.1e-05Not foundNot found
superfamilySSF103481Multidrug resistance 228 339 4.7e-06Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1632e-325NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9ZUI81e-123Q9ZUI8_ARATH T2K10.10 protein OS=Arabidopsis thaliana GN=At1g60050 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL5833(10 genes,6 taxa):Arabidopsis thalianaAT1G70260.1
ORTHOMCL5833(10 genes,6 taxa):Brassica oleraceaBol003334
ORTHOMCL5833(10 genes,6 taxa):Brassica oleraceaBol017399
ORTHOMCL5833(10 genes,6 taxa):Brassica oleraceaBol032985
ORTHOMCL5833(10 genes,6 taxa):Brassica rapaBra003959
ORTHOMCL5833(10 genes,6 taxa):Brassica rapaBra007904
ORTHOMCL5833(10 genes,6 taxa):Brassica rapaBra016228
ORTHOMCL5833(10 genes,6 taxa):Vitis viniferaGSVIVT01020185001
ORTHOMCL5833(10 genes,6 taxa):Populus trichocarpaPOPTR_0010s10610.1
ORTHOMCL5833(10 genes,6 taxa):Carica papayaevm.TU.supercontig_258.5
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:4201241..5347428 (-)A.thalianaChr1:26266609..26939106 (+)87
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:4201241..5223016 (+)B.rapaA09:19597984..20394745 (+)33
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G702602645684426459450Chr1Subgenome_III(LF)587
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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