Basic Information
Gene Model:Bol032868
Gene Family:Transcription Factor Families
Chromosome:C06
Scaffold:Scaffold000046
Sequence:
 | 
Gene Structure
Nucleotide Length:768 bp
Transcript Length:768 bp
Protein Length:255 aa
Strand:-
Location:C06: 6230545 : 6231312
Gene CDSs(1): 1-768 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS51032AP2_ERF 133 191 24.276IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 133 197 6.8e-41IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 132 194 2.3e-25IPR016177DNA-binding, integrase-type
Segsegseg 17 32 NANot foundNot found
Segsegseg 91 101 NANot foundNot found
Segsegseg 167 178 NANot foundNot found
HMMPfamPF00847AP2 132 184 6e-22IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene3DG3DSA:3.30.730.10no description 132 194 4.7e-25IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
O803372e-99EF100_ARATH Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2
TrEMBL
Best HitE_value Description
C0J9I99e-69C0J9I9_9ROSA Ethylene responsive transcription factor 1a OS=Prunus salicina GN=ERF1a PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G175004e-99K09286EREBPEREBP-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3207(13 genes,7 taxa):Arabidopsis thalianaAT4G17500.1
ORTHOMCL3207(13 genes,7 taxa):Brassica oleraceaBol019675
ORTHOMCL3207(13 genes,7 taxa):Brassica oleraceaBol032868
ORTHOMCL3207(13 genes,7 taxa):Brassica rapaBra021048
ORTHOMCL3207(13 genes,7 taxa):Brassica rapaBra040159
ORTHOMCL3207(13 genes,7 taxa):Oryza sativaOs02t0654700-01
ORTHOMCL3207(13 genes,7 taxa):Oryza sativaOs02t0654700-02
ORTHOMCL3207(13 genes,7 taxa):Populus trichocarpaPOPTR_0001s11770.1
ORTHOMCL3207(13 genes,7 taxa):Populus trichocarpaPOPTR_0001s15390.1
ORTHOMCL3207(13 genes,7 taxa):Populus trichocarpaPOPTR_0003s07910.1
ORTHOMCL3207(13 genes,7 taxa):Populus trichocarpaPOPTR_0003s15030.1
ORTHOMCL3207(13 genes,7 taxa):Sorghum bicolorSb04g033105.1
ORTHOMCL3207(13 genes,7 taxa):Carica papayaevm.TU.supercontig_13.237
Tandem Duplication
ClusterGene Num.Gene List
Cluster_15662Bol032866 Bol032868 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:6047293..6949410 (+)B.rapaA08:11077112..11414470 (+)27
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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