Basic Information
Gene Model:Bol032737
Gene Family:Transcription Factor Families
Chromosome:C03
Scaffold:Scaffold000047_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:1124 bp
Transcript Length:933 bp
Protein Length:310 aa
Strand:+
Location:C03: 47019736 : 47020859
Gene CDSs(3): 1-402 | 502-996 | 1089-1124 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50888HLH 138 195 9.021IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMSmartSM00353no description 157 200 2.3e-06IPR001092Basic helix-loop-helix dimerisation region bHLH
superfamilySSF47459HLH, helix-loop-heli 141 212 3.6e-10IPR011598Helix-loop-helix DNA-binding
Gene3DG3DSA:4.10.280.10no description 147 225 0.0003IPR011598Helix-loop-helix DNA-binding
HMMPfamPF00010HLH 152 195 0.0064IPR001092Basic helix-loop-helix dimerisation region bHLH
Segsegseg 229 240 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9T0721e-109BH025_ARATH Transcription factor bHLH25 OS=Arabidopsis thaliana GN=BHLH25 PE=2 SV=2
TrEMBL
Best HitE_value Description
B9SSE25e-39B9SSE2_RICCO DNA binding protein, putative OS=Ricinus communis GN=RCOM_0188790 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_08644701e-11K13422MYC2transcription factor MYC2
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:46792312..47526847 (-)A.thalianaChr4:17540490..17900305 (+)36
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:43707783..47772126 (+)B.rapaA08:6070921..7919442 (-)259
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G378501779609317797900Chr4Subgenome_II220
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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