Basic Information
Gene Model:Bol032722
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000047_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:4616 bp
Transcript Length:2997 bp
Protein Length:998 aa
Strand:+
Location:C03: 47232889 : 47237504
Gene CDSs(8): 1-240 | 318-616 | 692-863 | 946-1104 | 1625-2713 | 2849-3657 | 4300-4354 | 4443-4616 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00831no description 114 190 0.0037IPR004014ATPase, P-type cation-transporter, N-terminal
HMMPantherPTHR11939CATION-TRANSPORTING 6 864 0IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMPantherPTHR11939:SF73CATION-TRANSPORTING 6 864 0Not foundNot found
HMMTigrTIGR01494ATPase_P-type: ATPas 649 830 1.3e-52IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMTigrTIGR01494ATPase_P-type: ATPas 386 472 1.4e-23IPR001757ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter
HMMTigrTIGR01517ATPase-IIB_Ca: calci 82 998 0IPR006408ATPase, P-type, calcium-transporting, PMCA-type
PatternScanPS00154ATPASE_E1_E2 455 461 NAIPR018303ATPase, P-type phosphorylation site
Segsegseg 361 372 NANot foundNot found
Segsegseg 401 411 NANot foundNot found
HMMPfamPF00689Cation_ATPase_C 821 996 3e-52IPR006068ATPase, P-type cation-transporter, C-terminal
HMMPfamPF00702Hydrolase 449 760 2.5e-20IPR005834Haloacid dehalogenase-like hydrolase
HMMPfamPF00122E1-E2_ATPase 204 445 2.6e-73IPR008250ATPase, P-type, ATPase-associated region
HMMPfamPF00690Cation_ATPase_N 108 190 1.2e-14IPR004014ATPase, P-type cation-transporter, N-terminal
superfamilySSF56784HAD-like 446 793 4e-50Not foundNot found
superfamilySSF81653Calcium ATPase, tran 235 335 5.8e-27Not foundNot found
superfamilySSF81665Calcium ATPase, tran 111 997 2e-112Not foundNot found
Gene3DG3DSA:1.20.1110.10no description 302 468 3.3e-41Not foundNot found
Gene3DG3DSA:1.20.1110.10no description 710 996 3.8e-76Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0005388 Molecular Function calcium-transporting ATPase activity
GO:0005524 Molecular Function ATP binding
GO:0006754 Biological Process ATP biosynthetic process
GO:0006812 Biological Process cation transport
GO:0006816 Biological Process calcium ion transport
GO:0008152 Biological Process metabolic process
GO:0015085 Molecular Function calcium ion transmembrane transporter activity
GO:0015662 Molecular Function ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
GO:0016020 Cellular Component membrane
GO:0016820 Molecular Function hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
Swiss-Prot
Best HitE_value Description
O811080.0ACA2_ARATH Calcium-transporting ATPase 2, plasma membrane-type OS=Arabidopsis thaliana GN=ACA2 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q53XI00.0Q53XI0_ARATH At4g37640 OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G376400.0K01537E3.6.3.8Ca2+-transporting ATPase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:46792312..47526847 (-)A.thalianaChr4:17540490..17900305 (+)36
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:43707783..47772126 (+)B.rapaA08:6070921..7919442 (-)259
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G376401768297717686941Chr4Subgenome_II220
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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