Basic Information
Gene Model:Bol032663
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000048_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:5502 bp
Transcript Length:2211 bp
Protein Length:736 aa
Strand:+
Location:C09: 11743399 : 11748900
Gene CDSs(21): 1-176 | 569-652 | 734-815 | 927-977 | 1344-1514 | 1703-1857 | 1939-2047 | 2300-2399 | 2481-2536 | 2720-2785 | 2857-2939 | 3112-3245 | 3366-3576 | 3998-4129 | 4220-4280 | 4365-4424 | 4507-4565 | 4676-4763 | 4869-4991 | 5178-5243 | 5359-5502 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00382no description 245 392 2e-16IPR003593ATPase, AAA+ type, core
HMMSmartSM00382no description 525 663 7.1e-05IPR003593ATPase, AAA+ type, core
HMMPfamPF02933CDC48_2 114 177 5.6e-07IPR004201Cell division protein 48, CDC48, domain 2
HMMPfamPF00004AAA 248 447 8e-82IPR003959ATPase, AAA-type, core
HMMPfamPF02359CDC48_N 8 89 0.0078IPR003338ATPase, AAA-type, VAT, N-terminal
HMMPantherPTHR23078VESICULAR-FUSION PRO 1 736 0Not foundNot found
superfamilySSF50692ADC-like 6 88 8.2e-12IPR009010Aspartate decarboxylase-like fold
superfamilySSF52540P-loop containing nu 203 488 1.3e-50Not foundNot found
superfamilySSF52540P-loop containing nu 487 735 4e-31Not foundNot found
superfamilySSF54585Cdc48 domain 2-like 90 195 1.1e-23Not foundNot found
PatternScanPS00674AAA 360 378 NAIPR003960ATPase, AAA-type, conserved site
Gene3DG3DSA:3.40.50.300no description 196 388 8.5e-43Not foundNot found
Gene3DG3DSA:1.10.8.60no description 391 477 6.7e-17Not foundNot found
Gene3DG3DSA:3.40.50.300no description 487 658 3.4e-37Not foundNot found
Gene3DG3DSA:2.40.40.20no description 5 88 6.6e-08IPR009010Aspartate decarboxylase-like fold
Gene3DG3DSA:3.10.330.10no description 91 183 0.00012Not foundNot found
Segsegseg 589 600 NANot foundNot found
Segsegseg 619 631 NANot foundNot found
Segsegseg 677 689 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000166 Molecular Function nucleotide binding
GO:0005488 Molecular Function binding
GO:0005524 Molecular Function ATP binding
GO:0017111 Molecular Function nucleoside-triphosphatase activity
Swiss-Prot
Best HitE_value Description
Q9M0Y80.0NSF_ARATH Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=NSF PE=2 SV=2
TrEMBL
Best HitE_value Description
B9H2U60.0B9H2U6_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_831118 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G049100.0K06027NSFvesicle-fusing ATPase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1816(16 genes,8 taxa):Arabidopsis thalianaAT4G04910.1
ORTHOMCL1816(16 genes,8 taxa):Brassica oleraceaBol020264
ORTHOMCL1816(16 genes,8 taxa):Brassica oleraceaBol030577
ORTHOMCL1816(16 genes,8 taxa):Brassica oleraceaBol032663
ORTHOMCL1816(16 genes,8 taxa):Brassica rapaBra000808
ORTHOMCL1816(16 genes,8 taxa):Brassica rapaBra029529
ORTHOMCL1816(16 genes,8 taxa):Brassica rapaBra033538
ORTHOMCL1816(16 genes,8 taxa):Vitis viniferaGSVIVT01014341001
ORTHOMCL1816(16 genes,8 taxa):Oryza sativaOs05t0519400-01
ORTHOMCL1816(16 genes,8 taxa):Oryza sativaOs05t0519400-02
ORTHOMCL1816(16 genes,8 taxa):Oryza sativaOs05t0519400-03
ORTHOMCL1816(16 genes,8 taxa):Populus trichocarpaPOPTR_0004s04380.1
ORTHOMCL1816(16 genes,8 taxa):Populus trichocarpaPOPTR_0011s05260.1
ORTHOMCL1816(16 genes,8 taxa):Populus trichocarpaPOPTR_0011s05260.2
ORTHOMCL1816(16 genes,8 taxa):Sorghum bicolorSb01g014140.1
ORTHOMCL1816(16 genes,8 taxa):Carica papayaevm.TU.supercontig_21.39
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:11233406..12257389 (-)A.thalianaChr4:2116553..2752943 (+)61
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:11231312..12867288 (+)B.rapaA09:32509649..33588598 (-)86
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
OAT4G0491024894172495766Chr4Subgenome_III(LF)34
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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