Basic Information
Gene Model:Bol032614
Gene Family:Transcription Factor Families
Chromosome:C09
Scaffold:Scaffold000048_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:3055 bp
Transcript Length:1275 bp
Protein Length:424 aa
Strand:-
Location:C09: 11212845 : 11215899
Gene CDSs(12): 1-61 | 623-884 | 1088-1187 | 1280-1352 | 1425-1538 | 1633-1797 | 1872-1962 | 2057-2141 | 2461-2517 | 2625-2720 | 2801-2928 | 3013-3055 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:2.40.330.10no description 109 195 2.1e-20Not foundNot found
Segsegseg 185 196 NANot foundNot found
ProfileScanPS50863B3 119 181 10.828IPR003340Transcriptional factor B3
HMMPfamPF06507Auxin_resp 205 284 7.9e-28IPR010525Auxin response factor
HMMPfamPF02362B3 119 183 6.8e-14IPR003340Transcriptional factor B3
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0005634 Cellular Component nucleus
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0009725 Biological Process response to hormone stimulus
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9C8N91e-107ARFU_ARATH Putative auxin response factor 21 OS=Arabidopsis thaliana GN=ARF21 PE=2 SV=2
TrEMBL
Best HitE_value Description
C0SUZ11e-102C0SUZ1_ARATH Putative uncharacterized protein At1g34310 (Fragment) OS=Arabidopsis thaliana GN=At1g34310 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_8283214e-81K14486K14486, ARFauxin response factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL5442(11 genes,2 taxa):Brassica oleraceaBol006390
ORTHOMCL5442(11 genes,2 taxa):Brassica oleraceaBol020075
ORTHOMCL5442(11 genes,2 taxa):Brassica oleraceaBol024901
ORTHOMCL5442(11 genes,2 taxa):Brassica oleraceaBol027367
ORTHOMCL5442(11 genes,2 taxa):Brassica oleraceaBol032178
ORTHOMCL5442(11 genes,2 taxa):Brassica oleraceaBol032614
ORTHOMCL5442(11 genes,2 taxa):Brassica oleraceaBol035354
ORTHOMCL5442(11 genes,2 taxa):Brassica rapaBra017362
ORTHOMCL5442(11 genes,2 taxa):Brassica rapaBra018124
ORTHOMCL5442(11 genes,2 taxa):Brassica rapaBra027944
ORTHOMCL5442(11 genes,2 taxa):Brassica rapaBra034234
Tandem Duplication
ClusterGene Num.Gene List
Cluster_17912Bol032612 Bol032614 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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