Basic Information
Gene Model:Bol032549
Gene Family:Transcription Factor Families
Chromosome:C09
Scaffold:Scaffold000048_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:4553 bp
Transcript Length:1854 bp
Protein Length:617 aa
Strand:+
Location:C09: 10401055 : 10405607
Gene CDSs(12): 1-78 | 310-763 | 841-920 | 1019-1438 | 1852-1962 | 2063-2126 | 2198-2312 | 2408-2532 | 2647-2716 | 2797-2908 | 2986-3143 | 4487-4553 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF50249Nucleic acid-binding 524 586 2.3e-08IPR016027Nucleic acid-binding, OB-fold-like
HMMPfamPF02362B3 12 106 4.7e-22IPR003340Transcriptional factor B3
Segsegseg 284 309 NANot foundNot found
Segsegseg 515 527 NANot foundNot found
Segsegseg 119 137 NANot foundNot found
Segsegseg 143 174 NANot foundNot found
ProfileScanPS50863B3 11 104 13.479IPR003340Transcriptional factor B3
Gene3DG3DSA:2.40.330.10no description 3 106 1.1e-29Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q8LAV53e-65REM20_ARATH B3 domain-containing protein REM20 OS=Arabidopsis thaliana GN=REM20 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q2A9G23e-30Q2A9G2_BRAOL Putative uncharacterized protein OS=Brassica oleracea GN=27.t00116 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:9744881..10701542 (+)A.thalianaChr2:868359..1172363 (+)31
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:9989134..11159595 (+)B.rapaA09:27867810..28561850 (-)48
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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