Basic Information
Gene Model:Bol032499
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000048_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:1510 bp
Transcript Length:786 bp
Protein Length:261 aa
Strand:-
Location:Scaffold000048_P1: 136210 : 137719
Gene CDSs(5): 1-78 | 344-498 | 580-856 | 1061-1300 | 1475-1510 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00481PP2C 32 235 2.2e-40IPR014045Protein phosphatase 2C, N-terminal
HMMPantherPTHR13832PROTEIN PHOSPHATASE 10 237 4.7e-78IPR015655Protein phosphatase 2C
Gene3DG3DSA:3.60.40.10no description 30 241 1.4e-45IPR001932Protein phosphatase 2C-related
Segsegseg 249 259 NANot foundNot found
Segsegseg 9 30 NANot foundNot found
HMMSmartSM00332no description 29 261 8.3e-47IPR001932Protein phosphatase 2C-related
superfamilySSF81606Protein serine/threo 12 241 2.6e-49IPR001932Protein phosphatase 2C-related
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
Swiss-Prot
Best HitE_value Description
Q9LME41e-121P2C09_ARATH Probable protein phosphatase 2C 9 OS=Arabidopsis thaliana GN=At1g22280 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9H7301e-109B9H730_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1078275 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
aga:AgaP_AGAP0022667e-27K01090E3.1.3.16protein phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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