Basic Information
Gene Model:Bol032470
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000049
Sequence:
 | 
Gene Structure
Nucleotide Length:1574 bp
Transcript Length:774 bp
Protein Length:257 aa
Strand:+
Location:C09: 3608838 : 3610411
Gene CDSs(5): 1-97 | 193-225 | 659-887 | 993-1125 | 1293-1574 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50016ZF_PHD_2 201 253 9.374IPR019787Zinc finger, PHD-finger
PatternScanPS01359ZF_PHD_1 204 250 NAIPR019786Zinc finger, PHD-type, conserved site
Segsegseg 106 115 NANot foundNot found
Segsegseg 142 164 NANot foundNot found
Segsegseg 180 201 NANot foundNot found
Segsegseg 59 76 NANot foundNot found
superfamilySSF57903FYVE/PHD zinc finger 196 257 2e-11IPR011011Zinc finger, FYVE/PHD-type
Coilcoilcoiled-coil 179 200 NANot foundNot found
HMMSmartSM00249no description 203 251 4.5e-09IPR001965Zinc finger, PHD-type
HMMPfamPF00628PHD 203 253 3.5e-16IPR019787Zinc finger, PHD-finger
HMMPantherPTHR23123PHD/F-BOX CONTAINING 207 257 1.8e-11Not foundNot found
Gene3DG3DSA:3.30.40.10no description 196 257 5.7e-16Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
O814882e-95Y5621_ARATH PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2
TrEMBL
Best HitE_value Description
B9RQU21e-108B9RQU2_RICCO DNA binding protein, putative OS=Ricinus communis GN=RCOM_0706540 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
hmg:1002119981e-10K11728BPTF, E(bx)nucleosome-remodeling factor subunit BPTF
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL19327(3 genes,3 taxa):Arabidopsis thalianaAT5G26210.1
ORTHOMCL19327(3 genes,3 taxa):Brassica oleraceaBol032470
ORTHOMCL19327(3 genes,3 taxa):Brassica rapaBra036568
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:3328288..3914660 (-)A.thalianaChr5:8894179..9508878 (+)48
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:3125539..3940459 (+)B.rapaA09:7722370..8314838 (-)74
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
QAT5G2621091583189160383Chr5Subgenome_I85
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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