Basic Information
Gene Model:Bol032429
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000049
Sequence:
 | 
Gene Structure
Nucleotide Length:1861 bp
Transcript Length:1122 bp
Protein Length:373 aa
Strand:-
Location:C09: 3320695 : 3322555
Gene CDSs(5): 1-219 | 301-524 | 639-756 | 825-1139 | 1616-1861 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF81606Protein serine/threo 40 360 1e-58IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832PROTEIN PHOSPHATASE 39 357 3.3e-137IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF94PROTEIN PHOSPHATASE 39 357 3.3e-137Not foundNot found
Segsegseg 349 368 NANot foundNot found
Segsegseg 1 16 NANot foundNot found
HMMPfamPF00481PP2C 176 334 5.6e-35IPR014045Protein phosphatase 2C, N-terminal
Gene3DG3DSA:3.60.40.10no description 58 359 4.5e-59IPR001932Protein phosphatase 2C-related
HMMSmartSM00332no description 43 353 3.4e-55IPR001932Protein phosphatase 2C-related
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
Swiss-Prot
Best HitE_value Description
Q0WRB20.0P2C73_ARATH Probable protein phosphatase 2C 73 OS=Arabidopsis thaliana GN=PPC6-7 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9I7A61e-162B9I7A6_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_729481 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pif:PITG_093752e-35K07376PRKGprotein kinase, cGMP-dependent
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4170(12 genes,8 taxa):Arabidopsis thalianaAT5G27930.1
ORTHOMCL4170(12 genes,8 taxa):Brassica oleraceaBol012763
ORTHOMCL4170(12 genes,8 taxa):Brassica oleraceaBol032429
ORTHOMCL4170(12 genes,8 taxa):Brassica rapaBra020569
ORTHOMCL4170(12 genes,8 taxa):Brassica rapaBra036606
ORTHOMCL4170(12 genes,8 taxa):Vitis viniferaGSVIVT01031155001
ORTHOMCL4170(12 genes,8 taxa):Oryza sativaOs05t0358500-01
ORTHOMCL4170(12 genes,8 taxa):Oryza sativaOs05t0358500-02
ORTHOMCL4170(12 genes,8 taxa):Populus trichocarpaPOPTR_0005s02180.1
ORTHOMCL4170(12 genes,8 taxa):Populus trichocarpaPOPTR_0013s01370.1
ORTHOMCL4170(12 genes,8 taxa):Sorghum bicolorSb09g017821.1
ORTHOMCL4170(12 genes,8 taxa):Carica papayaevm.TU.supercontig_48.119
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:3034481..3330887 (+)A.thalianaChr5:9540925..9987990 (+)31
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:3125539..3940459 (+)B.rapaA09:7722370..8314838 (-)74
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
QAT5G2793099580989961264Chr5Subgenome_I85
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo