Basic Information
Gene Model:Bol032404
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000049
Sequence:
 | 
Gene Structure
Nucleotide Length:1050 bp
Transcript Length:1050 bp
Protein Length:349 aa
Strand:+
Location:C09: 3139312 : 3140361
Gene CDSs(1): 1-1050 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00184no description 121 162 3e-06IPR001841Zinc finger, RING-type
ProfileScanPS50089ZF_RING_2 121 163 12.652IPR001841Zinc finger, RING-type
Segsegseg 44 53 NANot foundNot found
HMMPfamPF00097zf-C3HC4 121 162 3e-13IPR018957Zinc finger, C3HC4 RING-type
Gene3DG3DSA:3.30.40.10no description 114 168 2e-15Not foundNot found
HMMPantherPTHR22764RING FINGER PROTEIN 120 178 6.1e-16Not foundNot found
superfamilySSF57850RING/U-box 114 168 1.5e-17Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
Q8LGA51e-140ATL5H_ARATH RING-H2 finger protein ATL5H OS=Arabidopsis thaliana GN=ATL5H PE=2 SV=2
TrEMBL
Best HitE_value Description
Q0WUY71e-139Q0WUY7_ARATH RING-H2 zinc finger protein-like OS=Arabidopsis thaliana GN=At5g27420 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
tad:TRIADDRAFT_542534e-11K11982RNF115_126E3 ubiquitin-protein ligase RNF115/126
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL26562(2 genes,2 taxa):Brassica oleraceaBol032404
ORTHOMCL26562(2 genes,2 taxa):Brassica rapaBra036631
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:3034481..3330887 (+)A.thalianaChr5:9540925..9987990 (+)31
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:3125539..3940459 (+)B.rapaA09:7722370..8314838 (-)74
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
QAT5G2742096840729685561Chr5Subgenome_I85
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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