Basic Information
Gene Model:Bol032388
Gene Family:Antiporter Super Family
Chromosome:C09
Scaffold:Scaffold000049
Sequence:
 | 
Gene Structure
Nucleotide Length:3256 bp
Transcript Length:1608 bp
Protein Length:535 aa
Strand:+
Location:C09: 3040995 : 3044250
Gene CDSs(13): 1-153 | 254-372 | 745-842 | 971-1030 | 1118-1164 | 1251-1445 | 1535-1581 | 1679-1745 | 1832-1932 | 2016-2256 | 2332-2394 | 2753-2836 | 2924-3256 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMTigrTIGR00840b_cpa1: sodium/hydro 12 512 1e-19IPR004709Na+/H+ exchanger, subfamily
Segsegseg 248 261 NANot foundNot found
Segsegseg 507 521 NANot foundNot found
Segsegseg 4 19 NANot foundNot found
HMMPantherPTHR10110:SF2SODIUM/HYDROGEN EXCH 232 535 4.5e-178IPR018407Na+/H+ exchanger, isoforms 1-4, conserved region
HMMPantherPTHR10110SODIUM/HYDROGEN EXCH 232 535 4.5e-178IPR018422Cation/H+ exchanger, conserved region
HMMPfamPF00999Na_H_Exchanger 18 437 5.5e-53IPR006153Cation/H+ exchanger
Gene Ontology
GO TermGO TypeDescription
GO:0006812 Biological Process cation transport
GO:0006814 Biological Process sodium ion transport
GO:0006885 Biological Process regulation of pH
GO:0015299 Molecular Function solute:hydrogen antiporter activity
GO:0015385 Molecular Function sodium:hydrogen antiporter activity
GO:0016021 Cellular Component integral to membrane
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q68KI40.0NHX1_ARATH Sodium/hydrogen exchanger 1 OS=Arabidopsis thaliana GN=NHX1 PE=1 SV=2
TrEMBL
Best HitE_value Description
A0FH770.0A0FH77_THEHA Sodium/hydrogen exchanger OS=Thellungiella halophila GN=NHX1 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
spu:5787653e-62K03316TC.CPA1monovalent cation:H+ antiporter, CPA1 family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL438(29 genes,8 taxa):Arabidopsis thalianaAT3G05030.1
ORTHOMCL438(29 genes,8 taxa):Arabidopsis thalianaAT3G06370.1
ORTHOMCL438(29 genes,8 taxa):Arabidopsis thalianaAT5G27150.1
ORTHOMCL438(29 genes,8 taxa):Brassica oleraceaBol001178
ORTHOMCL438(29 genes,8 taxa):Brassica oleraceaBol012788
ORTHOMCL438(29 genes,8 taxa):Brassica oleraceaBol032388
ORTHOMCL438(29 genes,8 taxa):Brassica rapaBra020599
ORTHOMCL438(29 genes,8 taxa):Brassica rapaBra020755
ORTHOMCL438(29 genes,8 taxa):Brassica rapaBra036110
ORTHOMCL438(29 genes,8 taxa):Brassica rapaBra039469
ORTHOMCL438(29 genes,8 taxa):Vitis viniferaGSVIVT01000002001
ORTHOMCL438(29 genes,8 taxa):Vitis viniferaGSVIVT01011001001
ORTHOMCL438(29 genes,8 taxa):Vitis viniferaGSVIVT01017814001
ORTHOMCL438(29 genes,8 taxa):Vitis viniferaGSVIVT01021972001
ORTHOMCL438(29 genes,8 taxa):Oryza sativaOs05t0148600-01
ORTHOMCL438(29 genes,8 taxa):Oryza sativaOs07t0666900-01
ORTHOMCL438(29 genes,8 taxa):Oryza sativaOs11t0648000-01
ORTHOMCL438(29 genes,8 taxa):Populus trichocarpaPOPTR_0005s04660.1
ORTHOMCL438(29 genes,8 taxa):Populus trichocarpaPOPTR_0010s03270.1
ORTHOMCL438(29 genes,8 taxa):Populus trichocarpaPOPTR_0013s02760.1
ORTHOMCL438(29 genes,8 taxa):Populus trichocarpaPOPTR_0013s03220.1
ORTHOMCL438(29 genes,8 taxa):Populus trichocarpaPOPTR_0014s12940.1
ORTHOMCL438(29 genes,8 taxa):Sorghum bicolorSb02g042190.1
ORTHOMCL438(29 genes,8 taxa):Sorghum bicolorSb05g025700.1
ORTHOMCL438(29 genes,8 taxa):Sorghum bicolorSb09g003590.2
ORTHOMCL438(29 genes,8 taxa):Carica papayaevm.TU.supercontig_117.29
ORTHOMCL438(29 genes,8 taxa):Carica papayaevm.TU.supercontig_16.109
ORTHOMCL438(29 genes,8 taxa):Carica papayaevm.TU.supercontig_48.7
ORTHOMCL438(29 genes,8 taxa):Carica papayaevm.TU.supercontig_9.162
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:3034481..3330887 (+)A.thalianaChr5:9540925..9987990 (+)31
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:2211386..3112657 (+)B.rapaA09:6772372..7415554 (-)106
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
QAT5G2715095534389557513Chr5Subgenome_I85
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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