Basic Information
Gene Model:Bol032354
Gene Family:Transcription Factor Families
Chromosome:C09
Scaffold:Scaffold000049
Sequence:
 | 
Gene Structure
Nucleotide Length:420 bp
Transcript Length:420 bp
Protein Length:139 aa
Strand:+
Location:C09: 2875289 : 2875708
Gene CDSs(1): 1-420 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF07716bZIP_2 12 66 9.1e-06IPR011700Basic leucine zipper
HMMSmartSM00338no description 12 76 9.7e-10IPR004827Basic-leucine zipper (bZIP) transcription factor
ProfileScanPS50217BZIP 14 77 9.530IPR004827Basic-leucine zipper (bZIP) transcription factor
Coilcoilcoiled-coil 39 81 NANot foundNot found
PatternScanPS00036BZIP_BASIC 19 34 NAIPR004827Basic-leucine zipper (bZIP) transcription factor
Gene Ontology
GO TermGO TypeDescription
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0005634 Cellular Component nucleus
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0043565 Molecular Function sequence-specific DNA binding
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
P240683e-07OCS1_MAIZE Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2
TrEMBL
Best HitE_value Description
Q9FGX22e-55Q9FGX2_ARATH Similarity to bZIP transcription factor OS=Arabidopsis thaliana GN=At5g49450 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002540835e-08K04371ERK1_2extracellular signal-regulated kinase 1/2
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL12089(7 genes,5 taxa):Arabidopsis thalianaAT5G49450.1
ORTHOMCL12089(7 genes,5 taxa):Brassica oleraceaBol016607
ORTHOMCL12089(7 genes,5 taxa):Brassica oleraceaBol032354
ORTHOMCL12089(7 genes,5 taxa):Brassica rapaBra010035
ORTHOMCL12089(7 genes,5 taxa):Populus trichocarpaPOPTR_0008s10620.1
ORTHOMCL12089(7 genes,5 taxa):Populus trichocarpaPOPTR_0010s15280.1
ORTHOMCL12089(7 genes,5 taxa):Carica papayaevm.TU.supercontig_9.71
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:2801206..3017187 (+)A.thalianaChr5:19908626..20164729 (+)16
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:2211386..3112657 (+)B.rapaA09:6772372..7415554 (-)106
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
WAT5G494502005182920052735Chr5Subgenome_III(LF)7
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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