Basic Information
Gene Model:Bol032344
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000049
Sequence:
 | 
Gene Structure
Nucleotide Length:1581 bp
Transcript Length:1020 bp
Protein Length:339 aa
Strand:-
Location:C09: 2784659 : 2786239
Gene CDSs(6): 1-369 | 450-602 | 688-815 | 905-1016 | 1115-1231 | 1441-1581 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00153Mito_carr 237 338 6.2e-28IPR018108Mitochondrial substrate/solute carrier
HMMPfamPF00153Mito_carr 17 121 3e-31IPR018108Mitochondrial substrate/solute carrier
HMMPfamPF00153Mito_carr 130 220 3.3e-29IPR018108Mitochondrial substrate/solute carrier
HMMPantherPTHR11896MITOCHONDRIAL CARRIE 17 335 3.4e-118IPR001993Mitochondrial substrate carrier
HMMPantherPTHR11896:SF34MITOCHONDRIAL CARRIE 17 335 3.4e-118Not foundNot found
ProfileScanPS50920SOLCAR 236 333 23.714IPR018108Mitochondrial substrate/solute carrier
ProfileScanPS50920SOLCAR 16 116 28.927IPR018108Mitochondrial substrate/solute carrier
ProfileScanPS50920SOLCAR 129 215 23.114IPR018108Mitochondrial substrate/solute carrier
superfamilySSF103506Mitochondrial carrie 13 330 6.5e-85IPR001993Mitochondrial substrate carrier
Gene Ontology
GO TermGO TypeDescription
GO:0005488 Molecular Function binding
GO:0006810 Biological Process transport
GO:0016020 Cellular Component membrane
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q5IS352e-55TPC_MACFA Mitochondrial thiamine pyrophosphate carrier OS=Macaca fascicularis GN=SLC25A19 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9FI730.0Q9FI73_ARATH Mitochondrial carrier protein-like OS=Arabidopsis thaliana GN=At5g48970/K19E20_10 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G564501e-29K05863ANTsolute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator)
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL8602(9 genes,7 taxa):Arabidopsis thalianaAT5G48970.1
ORTHOMCL8602(9 genes,7 taxa):Brassica oleraceaBol016578
ORTHOMCL8602(9 genes,7 taxa):Brassica oleraceaBol032344
ORTHOMCL8602(9 genes,7 taxa):Brassica rapaBra036153
ORTHOMCL8602(9 genes,7 taxa):Vitis viniferaGSVIVT01017745001
ORTHOMCL8602(9 genes,7 taxa):Oryza sativaOs01t0934200-01
ORTHOMCL8602(9 genes,7 taxa):Populus trichocarpaPOPTR_0010s02480.1
ORTHOMCL8602(9 genes,7 taxa):Populus trichocarpaPOPTR_0034s00220.1
ORTHOMCL8602(9 genes,7 taxa):Carica papayaevm.TU.supercontig_16.165
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:2211386..3112657 (+)B.rapaA09:6772372..7415554 (-)106
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo