Basic Information
Gene Model:Bol032276
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000049
Sequence:
 | 
Gene Structure
Nucleotide Length:1075 bp
Transcript Length:666 bp
Protein Length:221 aa
Strand:-
Location:C09: 2358909 : 2359983
Gene CDSs(4): 1-324 | 395-583 | 673-731 | 982-1075 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:1.20.5.110no description 127 191 1.9e-20Not foundNot found
HMMPfamPF05008V-SNARE 41 196 1.3e-62IPR007705Vesicle transport v-SNARE
Segsegseg 61 74 NANot foundNot found
HMMPantherPTHR21230:SF3VESICLE TRANSPORT V- 1 221 8.5e-99Not foundNot found
HMMPantherPTHR21230VESICLE TRANSPORT V- 1 221 8.5e-99Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0006886 Biological Process intracellular protein transport
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q9LVP91e-116VTI13_ARATH Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2 SV=1
TrEMBL
Best HitE_value Description
C6T7362e-98C6T736_SOYBN Putative uncharacterized protein OS=Glycine max PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G395101e-102K08493VTI1vesicle transport through interaction with t-SNAREs 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3333(13 genes,8 taxa):Arabidopsis thalianaAT5G39510.1
ORTHOMCL3333(13 genes,8 taxa):Brassica oleraceaBol032276
ORTHOMCL3333(13 genes,8 taxa):Brassica oleraceaBol036472
ORTHOMCL3333(13 genes,8 taxa):Brassica rapaBra036218
ORTHOMCL3333(13 genes,8 taxa):Vitis viniferaGSVIVT01007964001
ORTHOMCL3333(13 genes,8 taxa):Oryza sativaOs01t0707300-01
ORTHOMCL3333(13 genes,8 taxa):Populus trichocarpaPOPTR_0004s11470.1
ORTHOMCL3333(13 genes,8 taxa):Populus trichocarpaPOPTR_0004s11470.2
ORTHOMCL3333(13 genes,8 taxa):Populus trichocarpaPOPTR_0017s12360.1
ORTHOMCL3333(13 genes,8 taxa):Populus trichocarpaPOPTR_0017s12360.2
ORTHOMCL3333(13 genes,8 taxa):Sorghum bicolorSb03g032510.1
ORTHOMCL3333(13 genes,8 taxa):Carica papayaevm.TU.supercontig_13.285
ORTHOMCL3333(13 genes,8 taxa):Carica papayaevm.TU.supercontig_14.116
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:2008651..2375398 (-)A.thalianaChr5:15709474..16202932 (+)14
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:1903988..2445219 (+)B.rapaA09:6332889..6755268 (-)53
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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