Basic Information
Gene Model:Bol032238
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000049
Sequence:
 | 
Gene Structure
Nucleotide Length:2445 bp
Transcript Length:1107 bp
Protein Length:368 aa
Strand:+
Location:C09: 2092024 : 2094468
Gene CDSs(7): 1-191 | 280-345 | 862-975 | 1089-1317 | 1654-1815 | 1922-2073 | 2253-2445 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF103481Multidrug resistance 46 157 1e-07Not foundNot found
superfamilySSF103481Multidrug resistance 224 328 1.4e-08Not foundNot found
HMMPfamPF00892DUF6 25 154 1.8e-05IPR000620Protein of unknown function DUF6, transmembrane
Segsegseg 158 169 NANot foundNot found
Segsegseg 46 66 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1636e-375NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q94JU20.0Q94JU2_ARATH AT3g28050/MMG15_6 OS=Arabidopsis thaliana GN=At3g28050 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL9913(8 genes,6 taxa):Arabidopsis thalianaAT3G28050.1
ORTHOMCL9913(8 genes,6 taxa):Brassica oleraceaBol031206
ORTHOMCL9913(8 genes,6 taxa):Brassica oleraceaBol032238
ORTHOMCL9913(8 genes,6 taxa):Brassica rapaBra033035
ORTHOMCL9913(8 genes,6 taxa):Brassica rapaBra039062
ORTHOMCL9913(8 genes,6 taxa):Vitis viniferaGSVIVT01032511001
ORTHOMCL9913(8 genes,6 taxa):Populus trichocarpaPOPTR_0001s36190.1
ORTHOMCL9913(8 genes,6 taxa):Carica papayaevm.TU.supercontig_286.2
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:2008651..2375398 (-)A.thalianaChr5:15709474..16202932 (+)14
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:1903988..2445219 (+)B.rapaA09:6332889..6755268 (-)53
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
LAT3G280501044281410445398Chr3Subgenome_II79
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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