Basic Information
Gene Model:Bol032231
Gene Family:ARIADNE Gene Families
Chromosome:C09
Scaffold:Scaffold000049
Sequence:
 | 
Gene Structure
Nucleotide Length:1593 bp
Transcript Length:1593 bp
Protein Length:530 aa
Strand:+
Location:C09: 2032767 : 2034359
Gene CDSs(1): 1-1593 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS00518ZF_RING_1 239 248 NAIPR017907Zinc finger, RING-type, conserved site
HMMSmartSM00647no description 196 257 1e-19IPR002867Zinc finger, C6HC-type
HMMSmartSM00647no description 265 330 0.00021IPR002867Zinc finger, C6HC-type
HMMPantherPTHR11685:SF12RING ZINC FINGER PRO 81 528 6.2e-258Not foundNot found
HMMPantherPTHR11685ARIADNE RING ZINC FI 81 528 6.2e-258Not foundNot found
HMMPfamPF01485IBR 285 313 0.00088IPR002867Zinc finger, C6HC-type
HMMPfamPF01485IBR 196 257 4.4e-20IPR002867Zinc finger, C6HC-type
superfamilySSF57850RING/U-box 276 332 2.3e-13Not foundNot found
superfamilySSF57850RING/U-box 114 198 1.8e-09Not foundNot found
Segsegseg 2 32 NANot foundNot found
ProfileScanPS50089ZF_RING_2 127 176 9.716IPR001841Zinc finger, RING-type
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
Q9LVX00.0ARI3_ARATH Probable E3 ubiquitin-protein ligase ARI3 OS=Arabidopsis thaliana GN=ARI3 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9HRS71e-173B9HRS7_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_821209 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G160901e-179K11968ARIH1ariadne-1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1287(18 genes,8 taxa):Arabidopsis thalianaAT2G16090.1
ORTHOMCL1287(18 genes,8 taxa):Arabidopsis thalianaAT3G27710.1
ORTHOMCL1287(18 genes,8 taxa):Arabidopsis thalianaAT3G27720.1
ORTHOMCL1287(18 genes,8 taxa):Arabidopsis thalianaAT4G34370.1
ORTHOMCL1287(18 genes,8 taxa):Brassica oleraceaBol013659
ORTHOMCL1287(18 genes,8 taxa):Brassica oleraceaBol031186
ORTHOMCL1287(18 genes,8 taxa):Brassica oleraceaBol031869
ORTHOMCL1287(18 genes,8 taxa):Brassica oleraceaBol032231
ORTHOMCL1287(18 genes,8 taxa):Brassica rapaBra001960
ORTHOMCL1287(18 genes,8 taxa):Brassica rapaBra011524
ORTHOMCL1287(18 genes,8 taxa):Brassica rapaBra033024
ORTHOMCL1287(18 genes,8 taxa):Brassica rapaBra039068
ORTHOMCL1287(18 genes,8 taxa):Vitis viniferaGSVIVT01009627001
ORTHOMCL1287(18 genes,8 taxa):Vitis viniferaGSVIVT01031904001
ORTHOMCL1287(18 genes,8 taxa):Oryza sativaOs03t0233500-01
ORTHOMCL1287(18 genes,8 taxa):Populus trichocarpaPOPTR_0009s11430.1
ORTHOMCL1287(18 genes,8 taxa):Sorghum bicolorSb01g042240.1
ORTHOMCL1287(18 genes,8 taxa):Carica papayaevm.TU.supercontig_62.99
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:2008651..2375398 (-)A.thalianaChr5:15709474..16202932 (+)14
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:1903988..2445219 (+)B.rapaA09:6332889..6755268 (-)53
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
LAT3G277101026920610271065Chr3Subgenome_II79
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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