Basic Information
Gene Model:Bol032186
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000049
Sequence:
 | 
Gene Structure
Nucleotide Length:2286 bp
Transcript Length:2286 bp
Protein Length:761 aa
Strand:+
Location:C09: 1773475 : 1775760
Gene CDSs(1): 1-2286 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR10795SUBTILISIN/KEXIN-REL 29 760 0IPR015500Peptidase S8, subtilisin-related
HMMPantherPTHR10795:SF17SUBTILISIN-LIKE PROT 29 760 0Not foundNot found
PatternScanPS00138SUBTILASE_SER 543 553 NAIPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Segsegseg 2 13 NANot foundNot found
Gene3DG3DSA:3.40.50.200no description 133 614 2.1e-68IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
HMMPfamPF00082Peptidase_S8 539 603 7.1e-11IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
HMMPfamPF05922Inhibitor_I9 31 107 3e-22IPR010259Proteinase inhibitor I9, subtilisin propeptide
HMMPfamPF02225PA 365 464 9.5e-25IPR003137Protease-associated PA
superfamilySSF52025Transferrin receptor 374 518 2.2e-08Not foundNot found
superfamilySSF52743Subtilisin-like 89 620 3.7e-71IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Gene Ontology
GO TermGO TypeDescription
GO:0004252 Molecular Function serine-type endopeptidase activity
GO:0006508 Biological Process proteolysis
GO:0042802 Molecular Function identical protein binding
GO:0043086 Biological Process negative regulation of catalytic activity
Swiss-Prot
Best HitE_value Description
O653510.0SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9T4J80.0B9T4J8_RICCO Xylem serine proteinase 1, putative OS=Ricinus communis GN=RCOM_0396690 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL19(139 genes,8 taxa):Arabidopsis thalianaAT1G01900.1
ORTHOMCL19(139 genes,8 taxa):Arabidopsis thalianaAT1G04110.1
ORTHOMCL19(139 genes,8 taxa):Arabidopsis thalianaAT2G04160.1
ORTHOMCL19(139 genes,8 taxa):Arabidopsis thalianaAT2G05920.1
ORTHOMCL19(139 genes,8 taxa):Arabidopsis thalianaAT4G34980.1
ORTHOMCL19(139 genes,8 taxa):Arabidopsis thalianaAT5G45640.1
ORTHOMCL19(139 genes,8 taxa):Arabidopsis thalianaAT5G45650.1
ORTHOMCL19(139 genes,8 taxa):Arabidopsis thalianaAT5G51750.1
ORTHOMCL19(139 genes,8 taxa):Arabidopsis thalianaAT5G59810.1
ORTHOMCL19(139 genes,8 taxa):Arabidopsis thalianaAT5G67360.1
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol000227
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol004005
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol005074
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol005925
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol008090
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol008908
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol014309
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol014865
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol015953
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol019218
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol019219
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol019220
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol019222
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol024254
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol029398
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol032081
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol032186
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol035569
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol040437
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol040868
ORTHOMCL19(139 genes,8 taxa):Brassica oleraceaBol042499
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra001542
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra012157
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra013212
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra014350
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra015172
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra015290
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra017598
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra017684
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra020285
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra021529
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra021614
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra027353
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra027376
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra028274
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra033113
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra033226
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra036803
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra037112
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra037113
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra037115
ORTHOMCL19(139 genes,8 taxa):Brassica rapaBra039051
ORTHOMCL19(139 genes,8 taxa):Vitis viniferaGSVIVT01000156001
ORTHOMCL19(139 genes,8 taxa):Vitis viniferaGSVIVT01002783001
ORTHOMCL19(139 genes,8 taxa):Vitis viniferaGSVIVT01006968001
ORTHOMCL19(139 genes,8 taxa):Vitis viniferaGSVIVT01006970001
ORTHOMCL19(139 genes,8 taxa):Vitis viniferaGSVIVT01006972001
ORTHOMCL19(139 genes,8 taxa):Vitis viniferaGSVIVT01006973001
ORTHOMCL19(139 genes,8 taxa):Vitis viniferaGSVIVT01014788001
ORTHOMCL19(139 genes,8 taxa):Vitis viniferaGSVIVT01015069001
ORTHOMCL19(139 genes,8 taxa):Vitis viniferaGSVIVT01016682001
ORTHOMCL19(139 genes,8 taxa):Vitis viniferaGSVIVT01021314001
ORTHOMCL19(139 genes,8 taxa):Vitis viniferaGSVIVT01021320001
ORTHOMCL19(139 genes,8 taxa):Vitis viniferaGSVIVT01024042001
ORTHOMCL19(139 genes,8 taxa):Vitis viniferaGSVIVT01027586001
ORTHOMCL19(139 genes,8 taxa):Vitis viniferaGSVIVT01028051001
ORTHOMCL19(139 genes,8 taxa):Vitis viniferaGSVIVT01030138001
ORTHOMCL19(139 genes,8 taxa):Oryza sativaOs02t0198700-01
ORTHOMCL19(139 genes,8 taxa):Oryza sativaOs02t0779200-01
ORTHOMCL19(139 genes,8 taxa):Oryza sativaOs02t0779200-02
ORTHOMCL19(139 genes,8 taxa):Oryza sativaOs02t0779900-00
ORTHOMCL19(139 genes,8 taxa):Oryza sativaOs02t0780200-01
ORTHOMCL19(139 genes,8 taxa):Oryza sativaOs03t0143100-00
ORTHOMCL19(139 genes,8 taxa):Oryza sativaOs03t0242900-01
ORTHOMCL19(139 genes,8 taxa):Oryza sativaOs03t0605300-01
ORTHOMCL19(139 genes,8 taxa):Oryza sativaOs03t0761500-01
ORTHOMCL19(139 genes,8 taxa):Oryza sativaOs03t0761500-02
ORTHOMCL19(139 genes,8 taxa):Oryza sativaOs04t0573300-00
ORTHOMCL19(139 genes,8 taxa):Oryza sativaOs08t0326700-00
ORTHOMCL19(139 genes,8 taxa):Oryza sativaOs08t0452100-00
ORTHOMCL19(139 genes,8 taxa):Oryza sativaOs09t0441000-00
ORTHOMCL19(139 genes,8 taxa):Oryza sativaOs09t0479900-01
ORTHOMCL19(139 genes,8 taxa):Oryza sativaOs10t0394200-01
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0001s16390.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0001s16750.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0001s47280.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0001s47290.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0001s47300.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0002s12130.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0002s25800.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0003s06530.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0003s06940.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0004s17960.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0005s06820.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0005s18880.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0006s00370.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0006s14340.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0007s04500.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0007s04510.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0007s04510.2
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0007s04520.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0009s13590.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0011s03070.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0011s04970.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0011s04980.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0011s16870.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0012s14140.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0014s01910.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0014s07060.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0014s16970.1
ORTHOMCL19(139 genes,8 taxa):Populus trichocarpaPOPTR_0015s14110.1
ORTHOMCL19(139 genes,8 taxa):Sorghum bicolorSb01g000350.1
ORTHOMCL19(139 genes,8 taxa):Sorghum bicolorSb01g007310.1
ORTHOMCL19(139 genes,8 taxa):Sorghum bicolorSb01g013970.1
ORTHOMCL19(139 genes,8 taxa):Sorghum bicolorSb01g023190.1
ORTHOMCL19(139 genes,8 taxa):Sorghum bicolorSb01g041350.1
ORTHOMCL19(139 genes,8 taxa):Sorghum bicolorSb01g047390.1
ORTHOMCL19(139 genes,8 taxa):Sorghum bicolorSb02g025810.1
ORTHOMCL19(139 genes,8 taxa):Sorghum bicolorSb02g027810.1
ORTHOMCL19(139 genes,8 taxa):Sorghum bicolorSb03g033440.1
ORTHOMCL19(139 genes,8 taxa):Sorghum bicolorSb04g006740.1
ORTHOMCL19(139 genes,8 taxa):Sorghum bicolorSb04g034940.1
ORTHOMCL19(139 genes,8 taxa):Sorghum bicolorSb04g034950.1
ORTHOMCL19(139 genes,8 taxa):Sorghum bicolorSb04g034980.1
ORTHOMCL19(139 genes,8 taxa):Sorghum bicolorSb06g025980.1
ORTHOMCL19(139 genes,8 taxa):Sorghum bicolorSb07g022170.1
ORTHOMCL19(139 genes,8 taxa):Sorghum bicolorSb10g023870.1
ORTHOMCL19(139 genes,8 taxa):Carica papayaevm.TU.supercontig_12.100
ORTHOMCL19(139 genes,8 taxa):Carica papayaevm.TU.supercontig_136.70
ORTHOMCL19(139 genes,8 taxa):Carica papayaevm.TU.supercontig_18.162
ORTHOMCL19(139 genes,8 taxa):Carica papayaevm.TU.supercontig_21.114
ORTHOMCL19(139 genes,8 taxa):Carica papayaevm.TU.supercontig_25.132
ORTHOMCL19(139 genes,8 taxa):Carica papayaevm.TU.supercontig_27.203
ORTHOMCL19(139 genes,8 taxa):Carica papayaevm.TU.supercontig_28.23
ORTHOMCL19(139 genes,8 taxa):Carica papayaevm.TU.supercontig_37.148
ORTHOMCL19(139 genes,8 taxa):Carica papayaevm.TU.supercontig_4.162
ORTHOMCL19(139 genes,8 taxa):Carica papayaevm.TU.supercontig_481.2
ORTHOMCL19(139 genes,8 taxa):Carica papayaevm.TU.supercontig_6.54
ORTHOMCL19(139 genes,8 taxa):Carica papayaevm.TU.supercontig_87.29
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:1639248..2055076 (+)A.thalianaChr3:9823685..10319432 (+)32
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:1737464..2502086 (+)B.rapaA06:18736132..20022947 (+)67
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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