Basic Information
Gene Model:Bol032178
Gene Family:Transcription Factor Families
Chromosome:C09
Scaffold:Scaffold000049
Sequence:
 | 
Gene Structure
Nucleotide Length:4103 bp
Transcript Length:1272 bp
Protein Length:423 aa
Strand:-
Location:C09: 1727785 : 1731887
Gene CDSs(12): 1-3 | 1643-1926 | 2126-2264 | 2352-2424 | 2497-2610 | 2705-2869 | 2942-3032 | 3110-3194 | 3518-3574 | 3672-3767 | 3854-3975 | 4061-4103 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF06507Auxin_resp 203 282 7.9e-26IPR010525Auxin response factor
HMMPfamPF02362B3 114 181 1.7e-19IPR003340Transcriptional factor B3
Gene3DG3DSA:2.40.330.10no description 105 193 4.3e-21Not foundNot found
ProfileScanPS50863B3 114 179 11.209IPR003340Transcriptional factor B3
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0005634 Cellular Component nucleus
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0009725 Biological Process response to hormone stimulus
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9C8N91e-120ARFU_ARATH Putative auxin response factor 21 OS=Arabidopsis thaliana GN=ARF21 PE=2 SV=2
TrEMBL
Best HitE_value Description
C0SUZ11e-113C0SUZ1_ARATH Putative uncharacterized protein At1g34310 (Fragment) OS=Arabidopsis thaliana GN=At1g34310 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_04966203e-86K14486K14486, ARFauxin response factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL5442(11 genes,2 taxa):Brassica oleraceaBol006390
ORTHOMCL5442(11 genes,2 taxa):Brassica oleraceaBol020075
ORTHOMCL5442(11 genes,2 taxa):Brassica oleraceaBol024901
ORTHOMCL5442(11 genes,2 taxa):Brassica oleraceaBol027367
ORTHOMCL5442(11 genes,2 taxa):Brassica oleraceaBol032178
ORTHOMCL5442(11 genes,2 taxa):Brassica oleraceaBol032614
ORTHOMCL5442(11 genes,2 taxa):Brassica oleraceaBol035354
ORTHOMCL5442(11 genes,2 taxa):Brassica rapaBra017362
ORTHOMCL5442(11 genes,2 taxa):Brassica rapaBra018124
ORTHOMCL5442(11 genes,2 taxa):Brassica rapaBra027944
ORTHOMCL5442(11 genes,2 taxa):Brassica rapaBra034234
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:1639248..2055076 (+)A.thalianaChr3:9823685..10319432 (+)32
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:1387704..1900376 (+)B.rapaA01:21789263..22211446 (+)48
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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