Basic Information
Gene Model:Bol032158
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000049
Sequence:
 | 
Gene Structure
Nucleotide Length:3063 bp
Transcript Length:1398 bp
Protein Length:465 aa
Strand:-
Location:C09: 1600677 : 1603739
Gene CDSs(5): 1-456 | 854-1077 | 1172-1289 | 1780-2115 | 2800-3063 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.60.40.10no description 64 372 1.8e-59IPR001932Protein phosphatase 2C-related
Segsegseg 6 17 NANot foundNot found
Segsegseg 329 339 NANot foundNot found
HMMSmartSM00332no description 56 366 3.1e-73IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832PROTEIN PHOSPHATASE 43 381 6.1e-127IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF94PROTEIN PHOSPHATASE 43 381 6.1e-127Not foundNot found
HMMPfamPF00481PP2C 166 328 1.4e-38IPR014045Protein phosphatase 2C, N-terminal
superfamilySSF81606Protein serine/threo 46 373 1.4e-60IPR001932Protein phosphatase 2C-related
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
Swiss-Prot
Best HitE_value Description
Q8GY600.0P2C52_ARATH Probable protein phosphatase 2C 52 OS=Arabidopsis thaliana GN=At4g03415 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9N2A60.0B9N2A6_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_827706 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
tet:TTHERM_012434305e-33K01102E3.1.3.43, PDPpyruvate dehydrogenase phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2262(14 genes,8 taxa):Arabidopsis thalianaAT1G03590.1
ORTHOMCL2262(14 genes,8 taxa):Arabidopsis thalianaAT4G03415.1
ORTHOMCL2262(14 genes,8 taxa):Brassica oleraceaBol011630
ORTHOMCL2262(14 genes,8 taxa):Brassica oleraceaBol032158
ORTHOMCL2262(14 genes,8 taxa):Brassica rapaBra030536
ORTHOMCL2262(14 genes,8 taxa):Brassica rapaBra033411
ORTHOMCL2262(14 genes,8 taxa):Brassica rapaBra034206
ORTHOMCL2262(14 genes,8 taxa):Vitis viniferaGSVIVT01030553001
ORTHOMCL2262(14 genes,8 taxa):Oryza sativaOs07t0566200-01
ORTHOMCL2262(14 genes,8 taxa):Oryza sativaOs07t0566200-02
ORTHOMCL2262(14 genes,8 taxa):Populus trichocarpaPOPTR_0013s14030.1
ORTHOMCL2262(14 genes,8 taxa):Populus trichocarpaPOPTR_0019s13420.1
ORTHOMCL2262(14 genes,8 taxa):Sorghum bicolorSb02g036610.1
ORTHOMCL2262(14 genes,8 taxa):Carica papayaevm.TU.supercontig_34.123
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:500941..1722070 (+)A.thalianaChr4:570242..1610037 (+)122
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:84001..1692113 (+)B.rapaA03:17198572..18098626 (-)79
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
OAT4G0341515037081506500Chr4Subgenome_III(LF)188
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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