Basic Information
Gene Model:Bol032156
Gene Family:Protein Kinase Gene Families
Chromosome:C09
Scaffold:Scaffold000049
Sequence:
 | 
Gene Structure
Nucleotide Length:3746 bp
Transcript Length:2295 bp
Protein Length:764 aa
Strand:-
Location:C09: 1581054 : 1584799
Gene CDSs(14): 1-396 | 884-1022 | 1093-1364 | 1428-1783 | 1851-2239 | 2309-2374 | 2448-2513 | 2595-2666 | 2740-2811 | 2907-2978 | 3059-3124 | 3226-3297 | 3398-3527 | 3620-3746 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50011PROTEIN_KINASE_DOM 473 764 31.326IPR000719Protein kinase, catalytic domain
Gene3DG3DSA:1.10.510.10no description 553 760 2.2e-32Not foundNot found
Gene3DG3DSA:3.30.200.20no description 464 552 2.4e-17Not foundNot found
Gene3DG3DSA:3.80.10.10no description 36 245 3.3e-37Not foundNot found
Segsegseg 415 430 NANot foundNot found
Segsegseg 604 619 NANot foundNot found
Segsegseg 625 639 NANot foundNot found
Segsegseg 277 283 NANot foundNot found
Segsegseg 293 307 NANot foundNot found
Segsegseg 314 331 NANot foundNot found
Segsegseg 17 27 NANot foundNot found
Segsegseg 150 164 NANot foundNot found
Segsegseg 215 226 NANot foundNot found
Segsegseg 256 272 NANot foundNot found
HMMSmartSM00219no description 473 715 5.3e-12IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 473 763 1.1e-11IPR002290Serine/threonine-protein kinase domain
HMMPantherPTHR23258SERINE-THREONINE PRO 86 658 1.2e-208Not foundNot found
HMMPantherPTHR23258:SF463STRUBBELIG RECEPTOR 86 658 1.2e-208Not foundNot found
HMMPfamPF00560LRR_1 200 221 1.9IPR001611Leucine-rich repeat
HMMPfamPF07714Pkinase_Tyr 473 677 3.3e-25IPR001245Tyrosine-protein kinase, catalytic domain
HMMPfamPF00560LRR_1 176 198 0.034IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 152 174 1.2IPR001611Leucine-rich repeat
HMMPfamPF00560LRR_1 128 150 0.037IPR001611Leucine-rich repeat
HMMPfamPF08263LRRNT_2 39 79 4e-08IPR013210Leucine-rich repeat, N-terminal
superfamilySSF52058L domain-like 36 241 3e-39Not foundNot found
superfamilySSF101447Formin homology 2 do 417 574 5.2e-07IPR015425Actin-binding FH2
superfamilySSF56112Protein kinase-like 443 756 2.2e-59IPR011009Protein kinase-like domain
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0004713 Molecular Function protein tyrosine kinase activity
GO:0005515 Molecular Function protein binding
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q6R2K30.0SRF3_ARATH Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=1 SV=1
TrEMBL
Best HitE_value Description
C0LGQ20.0C0LGQ2_ARATH Leucine-rich repeat receptor-like protein kinase (Fragment) OS=Arabidopsis thaliana GN=LRR-RLK PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
osa:43294636e-56K13430PBS1serine/threonine-protein kinase PBS1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1137(19 genes,8 taxa):Arabidopsis thalianaAT2G20850.1
ORTHOMCL1137(19 genes,8 taxa):Arabidopsis thalianaAT4G03390.1
ORTHOMCL1137(19 genes,8 taxa):Brassica oleraceaBol030606
ORTHOMCL1137(19 genes,8 taxa):Brassica oleraceaBol032156
ORTHOMCL1137(19 genes,8 taxa):Brassica rapaBra000827
ORTHOMCL1137(19 genes,8 taxa):Brassica rapaBra034204
ORTHOMCL1137(19 genes,8 taxa):Vitis viniferaGSVIVT01030565001
ORTHOMCL1137(19 genes,8 taxa):Oryza sativaOs02t0176100-01
ORTHOMCL1137(19 genes,8 taxa):Oryza sativaOs02t0176100-02
ORTHOMCL1137(19 genes,8 taxa):Populus trichocarpaPOPTR_0004s03720.1
ORTHOMCL1137(19 genes,8 taxa):Populus trichocarpaPOPTR_0011s04540.1
ORTHOMCL1137(19 genes,8 taxa):Populus trichocarpaPOPTR_0013s14080.1
ORTHOMCL1137(19 genes,8 taxa):Populus trichocarpaPOPTR_0013s14080.2
ORTHOMCL1137(19 genes,8 taxa):Populus trichocarpaPOPTR_0019s13490.1
ORTHOMCL1137(19 genes,8 taxa):Populus trichocarpaPOPTR_0019s13490.2
ORTHOMCL1137(19 genes,8 taxa):Sorghum bicolorSb02g036540.1
ORTHOMCL1137(19 genes,8 taxa):Sorghum bicolorSb04g005115.1
ORTHOMCL1137(19 genes,8 taxa):Sorghum bicolorSb10g026340.1
ORTHOMCL1137(19 genes,8 taxa):Carica papayaevm.TU.supercontig_34.113
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:500941..1722070 (+)A.thalianaChr4:570242..1610037 (+)122
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:84001..1692113 (+)B.rapaA03:17198572..18098626 (-)79
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
OAT4G0339014904651495103Chr4Subgenome_III(LF)188
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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