Basic Information
Gene Model:Bol032147
Gene Family:Transcription Factor Families
Chromosome:C09
Scaffold:Scaffold000050
Sequence:
 | 
Gene Structure
Nucleotide Length:1530 bp
Transcript Length:1530 bp
Protein Length:509 aa
Strand:+
Location:C09: 8531203 : 8532732
Gene CDSs(1): 1-1530 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00010HLH 337 386 1.4e-05IPR001092Basic helix-loop-helix dimerisation region bHLH
Coilcoilcoiled-coil 382 410 NANot foundNot found
Segsegseg 19 30 NANot foundNot found
Segsegseg 119 128 NANot foundNot found
Segsegseg 319 336 NANot foundNot found
ProfileScanPS50888HLH 326 386 11.912IPR001092Basic helix-loop-helix dimerisation region bHLH
Gene3DG3DSA:4.10.280.10no description 332 416 1.5e-07IPR011598Helix-loop-helix DNA-binding
HMMSmartSM00353no description 342 391 9.7e-10IPR001092Basic helix-loop-helix dimerisation region bHLH
superfamilySSF47459HLH, helix-loop-heli 326 403 9.4e-14IPR011598Helix-loop-helix DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9LUK71e-133BH028_ARATH Transcription factor bHLH28 OS=Arabidopsis thaliana GN=BHLH28 PE=2 SV=1
TrEMBL
Best HitE_value Description
C0SVS81e-132C0SVS8_ARATH Putative uncharacterized protein At5g46830 (Fragment) OS=Arabidopsis thaliana GN=At5g46830 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G326401e-130K13422MYC2transcription factor MYC2
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL14409(5 genes,3 taxa):Arabidopsis thalianaAT5G46830.1
ORTHOMCL14409(5 genes,3 taxa):Brassica oleraceaBol032146
ORTHOMCL14409(5 genes,3 taxa):Brassica oleraceaBol032147
ORTHOMCL14409(5 genes,3 taxa):Brassica rapaBra017520
ORTHOMCL14409(5 genes,3 taxa):Brassica rapaBra017523
Tandem Duplication
ClusterGene Num.Gene List
Cluster_17262Bol032146 Bol032147 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:6792544..9187912 (+)A.thalianaChr5:18182038..19345039 (+)93
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:7008237..9980045 (+)B.rapaA09:28783834..30559997 (-)106
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
VAT5G468301900271919004254Chr5Subgenome_II97
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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