Basic Information
Gene Model:Bol032065
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000050
Sequence:
 | 
Gene Structure
Nucleotide Length:1633 bp
Transcript Length:1155 bp
Protein Length:384 aa
Strand:+
Location:C09: 7211747 : 7213379
Gene CDSs(6): 1-215 | 332-394 | 485-601 | 688-1129 | 1233-1384 | 1468-1633 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 326 342 NANot foundNot found
superfamilySSF103481Multidrug resistance 54 165 9.8e-09Not foundNot found
superfamilySSF103481Multidrug resistance 245 353 2.4e-13Not foundNot found
HMMPfamPF00892DUF6 29 156 6.5e-11IPR000620Protein of unknown function DUF6, transmembrane
HMMPfamPF00892DUF6 219 346 1.3e-16IPR000620Protein of unknown function DUF6, transmembrane
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1631e-565NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
A1A6M00.0A1A6M0_ARATH At5g45370 OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL8578(9 genes,5 taxa):Arabidopsis thalianaAT5G45370.2
ORTHOMCL8578(9 genes,5 taxa):Brassica oleraceaBol032065
ORTHOMCL8578(9 genes,5 taxa):Brassica oleraceaBol032066
ORTHOMCL8578(9 genes,5 taxa):Brassica rapaBra027604
ORTHOMCL8578(9 genes,5 taxa):Brassica rapaBra027605
ORTHOMCL8578(9 genes,5 taxa):Oryza sativaOs02t0703900-01
ORTHOMCL8578(9 genes,5 taxa):Oryza sativaOs02t0703900-02
ORTHOMCL8578(9 genes,5 taxa):Sorghum bicolorSb01g033660.1
ORTHOMCL8578(9 genes,5 taxa):Sorghum bicolorSb01g033670.1
Tandem Duplication
ClusterGene Num.Gene List
Cluster_12382Bol032065 Bol032066 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:6792544..9187912 (+)A.thalianaChr5:18182038..19345039 (+)93
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:7008237..9980045 (+)B.rapaA09:28783834..30559997 (-)106
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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