Basic Information
Gene Model:Bol032021
Gene Family:Transcription Factor Families
Chromosome:C05
Scaffold:Scaffold000051
Sequence:
 | 
Gene Structure
Nucleotide Length:552 bp
Transcript Length:552 bp
Protein Length:183 aa
Strand:-
Location:C05: 9300004 : 9300555
Gene CDSs(1): 1-552 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.30.730.10no description 18 79 1.3e-22IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 18 79 1.3e-22IPR016177DNA-binding, integrase-type
Segsegseg 52 63 NANot foundNot found
ProfileScanPS51032AP2_ERF 19 76 22.906IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMPfamPF00847AP2 18 69 7.8e-20IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 19 82 2.9e-36IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9LQ284e-74ERF22_ARATH Ethylene-responsive transcription factor ERF022 OS=Arabidopsis thaliana GN=ERF022 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9GX156e-43B9GX15_POPTR AP2/ERF domain-containing transcription factor OS=Populus trichocarpa GN=DREB51 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G115902e-25K09286EREBPEREBP-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL26519(2 genes,2 taxa):Brassica oleraceaBol032021
ORTHOMCL26519(2 genes,2 taxa):Brassica rapaBra010210
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:9140497..10794934 (+)B.rapaA09:24121347..25005418 (-)51
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
BAT1G337601223787812238598Chr1Subgenome_I29
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo