Basic Information
Gene Model:Bol031869
Gene Family:ARIADNE Gene Families
Chromosome:C07
Scaffold:Scaffold000052
Sequence:
 | 
Gene Structure
Nucleotide Length:2367 bp
Transcript Length:1746 bp
Protein Length:581 aa
Strand:+
Location:C07: 14501706 : 14504072
Gene CDSs(7): 1-129 | 277-309 | 405-684 | 789-1269 | 1356-1904 | 1992-2140 | 2243-2367 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF01485IBR 194 256 2.2e-24IPR002867Zinc finger, C6HC-type
superfamilySSF57850RING/U-box 100 215 3e-09Not foundNot found
HMMPantherPTHR11685ARIADNE RING ZINC FI 80 534 0Not foundNot found
superfamilySSF57850RING/U-box 275 331 4.8e-14Not foundNot found
HMMPantherPTHR11685:SF12RING ZINC FINGER PRO 80 534 0Not foundNot found
ProfileScanPS50089ZF_RING_2 123 171 8.860IPR001841Zinc finger, RING-type
Segsegseg 236 247 NANot foundNot found
HMMSmartSM00647no description 264 329 0.012IPR002867Zinc finger, C6HC-type
HMMSmartSM00647no description 194 256 7.8e-23IPR002867Zinc finger, C6HC-type
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
Q84RR20.0ARI2_ARATH Probable E3 ubiquitin-protein ligase ARI2 OS=Arabidopsis thaliana GN=ARI2 PE=2 SV=1
TrEMBL
Best HitE_value Description
A7P9590.0A7P959_VITVI Chromosome chr3 scaffold_8, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00036439001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G160900.0K11968ARIH1ariadne-1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1287(18 genes,8 taxa):Arabidopsis thalianaAT2G16090.1
ORTHOMCL1287(18 genes,8 taxa):Arabidopsis thalianaAT3G27710.1
ORTHOMCL1287(18 genes,8 taxa):Arabidopsis thalianaAT3G27720.1
ORTHOMCL1287(18 genes,8 taxa):Arabidopsis thalianaAT4G34370.1
ORTHOMCL1287(18 genes,8 taxa):Brassica oleraceaBol013659
ORTHOMCL1287(18 genes,8 taxa):Brassica oleraceaBol031186
ORTHOMCL1287(18 genes,8 taxa):Brassica oleraceaBol031869
ORTHOMCL1287(18 genes,8 taxa):Brassica oleraceaBol032231
ORTHOMCL1287(18 genes,8 taxa):Brassica rapaBra001960
ORTHOMCL1287(18 genes,8 taxa):Brassica rapaBra011524
ORTHOMCL1287(18 genes,8 taxa):Brassica rapaBra033024
ORTHOMCL1287(18 genes,8 taxa):Brassica rapaBra039068
ORTHOMCL1287(18 genes,8 taxa):Vitis viniferaGSVIVT01009627001
ORTHOMCL1287(18 genes,8 taxa):Vitis viniferaGSVIVT01031904001
ORTHOMCL1287(18 genes,8 taxa):Oryza sativaOs03t0233500-01
ORTHOMCL1287(18 genes,8 taxa):Populus trichocarpaPOPTR_0009s11430.1
ORTHOMCL1287(18 genes,8 taxa):Sorghum bicolorSb01g042240.1
ORTHOMCL1287(18 genes,8 taxa):Carica papayaevm.TU.supercontig_62.99
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:7024430..15971850 (-)A.thalianaChr2:6385872..8577947 (+)210
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:11194729..14628022 (+)B.rapaA10:4796831..6248193 (-)87
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
HAT2G1609069868346990051Chr2Subgenome_III(LF)76
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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