Basic Information
Gene Model:Bol031864
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000052
Sequence:
 | 
Gene Structure
Nucleotide Length:2552 bp
Transcript Length:1740 bp
Protein Length:579 aa
Strand:-
Location:C07: 14331274 : 14333825
Gene CDSs(4): 1-219 | 871-1917 | 2005-2351 | 2426-2552 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF103473MFS general substrat 1 486 1.7e-71IPR016196Major facilitator superfamily, general substrate transporter
Segsegseg 453 474 NANot foundNot found
ProfileScanPS50850MFS 29 478 46.810Not foundNot found
Coilcoilcoiled-coil 225 246 NANot foundNot found
HMMPfamPF00083Sugar_tr 29 489 1.3e-113IPR005828General substrate transporter
PatternScanPS00217SUGAR_TRANSPORT_2 125 150 NAIPR005829Sugar transporter, conserved site
PatternScanPS00216SUGAR_TRANSPORT_1 83 100 NAIPR005829Sugar transporter, conserved site
HMMPantherPTHR11600SUGAR TRANSPORTER 24 350 1.7e-190Not foundNot found
HMMTigrTIGR00879SP: MFS transporter, 1 485 8.3e-77IPR003663Sugar/inositol transporter
HMMPantherPTHR11600:SF85SUGAR TRANSPORTER 24 350 1.7e-190Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005215 Molecular Function transporter activity
GO:0006810 Biological Process transport
GO:0016020 Cellular Component membrane
GO:0016021 Cellular Component integral to membrane
GO:0022891 Molecular Function substrate-specific transmembrane transporter activity
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q9XIH70.0PLT1_ARATH Putative polyol transporter 1 OS=Arabidopsis thaliana GN=PLT1 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9RZB40.0B9RZB4_RICCO Sugar transporter, putative OS=Ricinus communis GN=RCOM_0937520 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002680238e-55K08150SLC2A13, ITRMFS transporter, SP family, solute carrier family 2 (myo-inositol transporter), member 13
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL463(28 genes,7 taxa):Arabidopsis thalianaAT2G16120.1
ORTHOMCL463(28 genes,7 taxa):Arabidopsis thalianaAT2G16130.1
ORTHOMCL463(28 genes,7 taxa):Arabidopsis thalianaAT3G18830.1
ORTHOMCL463(28 genes,7 taxa):Brassica oleraceaBol022867
ORTHOMCL463(28 genes,7 taxa):Brassica oleraceaBol030979
ORTHOMCL463(28 genes,7 taxa):Brassica oleraceaBol031861
ORTHOMCL463(28 genes,7 taxa):Brassica oleraceaBol031864
ORTHOMCL463(28 genes,7 taxa):Brassica rapaBra001725
ORTHOMCL463(28 genes,7 taxa):Brassica rapaBra001966
ORTHOMCL463(28 genes,7 taxa):Brassica rapaBra001967
ORTHOMCL463(28 genes,7 taxa):Brassica rapaBra037555
ORTHOMCL463(28 genes,7 taxa):Oryza sativaOs01t0966900-00
ORTHOMCL463(28 genes,7 taxa):Oryza sativaOs03t0197100-01
ORTHOMCL463(28 genes,7 taxa):Oryza sativaOs07t0582400-01
ORTHOMCL463(28 genes,7 taxa):Oryza sativaOs07t0582500-01
ORTHOMCL463(28 genes,7 taxa):Populus trichocarpaPOPTR_0004s15900.1
ORTHOMCL463(28 genes,7 taxa):Populus trichocarpaPOPTR_0004s15960.1
ORTHOMCL463(28 genes,7 taxa):Populus trichocarpaPOPTR_0009s11650.1
ORTHOMCL463(28 genes,7 taxa):Sorghum bicolorSb01g031360.1
ORTHOMCL463(28 genes,7 taxa):Sorghum bicolorSb01g044000.1
ORTHOMCL463(28 genes,7 taxa):Sorghum bicolorSb01g044010.1
ORTHOMCL463(28 genes,7 taxa):Sorghum bicolorSb02g037570.1
ORTHOMCL463(28 genes,7 taxa):Sorghum bicolorSb02g037580.1
ORTHOMCL463(28 genes,7 taxa):Sorghum bicolorSb02g037590.1
ORTHOMCL463(28 genes,7 taxa):Sorghum bicolorSb09g007450.1
ORTHOMCL463(28 genes,7 taxa):Carica papayaevm.TU.supercontig_62.116
ORTHOMCL463(28 genes,7 taxa):Carica papayaevm.TU.supercontig_62.117
ORTHOMCL463(28 genes,7 taxa):Carica papayaevm.TU.supercontig_62.120
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:7024430..15971850 (-)A.thalianaChr2:6385872..8577947 (+)210
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:11194729..14628022 (+)B.rapaA10:4796831..6248193 (-)87
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
HAT2G1612069967276998441Chr2Subgenome_III(LF)76
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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