| Basic Information |
| Gene Model: | Bol031797 |
| Gene Family: | Transcription Factor Families |
| Chromosome: | Cun |
| Scaffold: | Scaffold000053 |
| Sequence: | |
| Gene Structure |
|
| Nucleotide Length: | 741 bp |
| Transcript Length: | 741 bp |
| Protein Length: | 246 aa |
| Strand: | + |
| Location: | Scaffold000053: 1758636 : 1759376 |
| Gene CDSs(1): | 1-741 | |
| Protein Sequence Features |
| Interpro |
 |
| Database | Terms | Identifier | Start | End | E-value | InterPro ID | Description | | HMMPfam | PF00847 | AP2 |
52 |
103 |
2.5e-21 | IPR001471 | Pathogenesis-related transcriptional factor/ERF, DNA-binding | | superfamily | SSF54171 | DNA-binding domain |
52 |
113 |
1e-22 | IPR016177 | DNA-binding, integrase-type | | ProfileScan | PS51032 | AP2_ERF |
53 |
110 |
22.221 | IPR001471 | Pathogenesis-related transcriptional factor/ERF, DNA-binding | | HMMSmart | SM00380 | no description |
53 |
116 |
1.5e-35 | IPR001471 | Pathogenesis-related transcriptional factor/ERF, DNA-binding | | Gene3D | G3DSA:3.30.730.10 | no description |
52 |
113 |
3.4e-22 | IPR001471 | Pathogenesis-related transcriptional factor/ERF, DNA-binding | | Seg | seg | seg |
193 |
206 |
NA | Not found | Not found | | Seg | seg | seg |
86 |
97 |
NA | Not found | Not found | |
| Gene Ontology |
| GO Term | GO Type | Description |
| GO:0003677 |
Molecular Function |
DNA binding | | GO:0003700 |
Molecular Function |
sequence-specific DNA binding transcription factor activity | | GO:0006355 |
Biological Process |
regulation of transcription, DNA-dependent |
|
| Swiss-Prot |
| Best Hit | E_value |
Description | | Q9SIE4 | 5e-94 | ERF56_ARATH Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1 |
|
| TrEMBL |
| Best Hit | E_value |
Description | | A9PFU0 | 4e-53 | A9PFU0_POPTR AP2/ERF domain-containing transcription factor OS=Populus trichocarpa GN=DREB20 PE=2 SV=1 |
|
| KEGG |
|
| Gene Cluster |
| Orthologs |
| OrthoMCL Group | Species | Gene List | | ORTHOMCL18027(3 genes,3 taxa): | Arabidopsis thaliana | AT2G22200.1 | | ORTHOMCL18027(3 genes,3 taxa): | Brassica oleracea | Bol031797 | | ORTHOMCL18027(3 genes,3 taxa): | Brassica rapa | Bra030255 |
|
| Tandem Duplication |
| Cluster | Gene Num. | Gene List | The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase. |
|
| Synteny Analysis |
| Synteny Genes |
| Note: This gene was not anchored on pseudo-chromosomes. |
| Synteny Regions |
| Species | Region | Mapped Species | Mapped Region | Num. of Genewise | Note: this gene was not anchored on syntenic regions compared to A.thaliana genome. |
|
| Species | Region | Mapped Species | Mapped Region | Num. of Genewise | Note: this gene was not anchored on syntenic regions compared to B.rapa genome. |
|
| Trplicated Block |
| Block | Best Hit | Start | END | Chromosome | Subgenome | Num. of Gene Pairs on Block | Note: this gene was no corresponding triplicated genes. | |
|
