Basic Information |
Gene Model: | Bol031797 |
Gene Family: | Transcription Factor Families |
Chromosome: | Cun |
Scaffold: | Scaffold000053 |
Sequence: | |
Gene Structure |
|
Nucleotide Length: | 741 bp |
Transcript Length: | 741 bp |
Protein Length: | 246 aa |
Strand: | + |
Location: | Scaffold000053: 1758636 : 1759376 |
Gene CDSs(1): | 1-741 | |
Protein Sequence Features |
Interpro |
 |
Database | Terms | Identifier | Start | End | E-value | InterPro ID | Description | HMMPfam | PF00847 | AP2 |
52 |
103 |
2.5e-21 | IPR001471 | Pathogenesis-related transcriptional factor/ERF, DNA-binding | superfamily | SSF54171 | DNA-binding domain |
52 |
113 |
1e-22 | IPR016177 | DNA-binding, integrase-type | ProfileScan | PS51032 | AP2_ERF |
53 |
110 |
22.221 | IPR001471 | Pathogenesis-related transcriptional factor/ERF, DNA-binding | HMMSmart | SM00380 | no description |
53 |
116 |
1.5e-35 | IPR001471 | Pathogenesis-related transcriptional factor/ERF, DNA-binding | Gene3D | G3DSA:3.30.730.10 | no description |
52 |
113 |
3.4e-22 | IPR001471 | Pathogenesis-related transcriptional factor/ERF, DNA-binding | Seg | seg | seg |
193 |
206 |
NA | Not found | Not found | Seg | seg | seg |
86 |
97 |
NA | Not found | Not found | |
Gene Ontology |
GO Term | GO Type | Description |
GO:0003677 |
Molecular Function |
DNA binding | GO:0003700 |
Molecular Function |
sequence-specific DNA binding transcription factor activity | GO:0006355 |
Biological Process |
regulation of transcription, DNA-dependent |
|
Swiss-Prot |
Best Hit | E_value |
Description | Q9SIE4 | 5e-94 | ERF56_ARATH Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1 |
|
TrEMBL |
Best Hit | E_value |
Description | A9PFU0 | 4e-53 | A9PFU0_POPTR AP2/ERF domain-containing transcription factor OS=Populus trichocarpa GN=DREB20 PE=2 SV=1 |
|
KEGG |
|
Gene Cluster |
Orthologs |
OrthoMCL Group | Species | Gene List | ORTHOMCL18027(3 genes,3 taxa): | Arabidopsis thaliana | AT2G22200.1 | ORTHOMCL18027(3 genes,3 taxa): | Brassica oleracea | Bol031797 | ORTHOMCL18027(3 genes,3 taxa): | Brassica rapa | Bra030255 |
|
Tandem Duplication |
Cluster | Gene Num. | Gene List | The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase. |
|
Synteny Analysis |
Synteny Genes |
Note: This gene was not anchored on pseudo-chromosomes. |
Synteny Regions |
Species | Region | Mapped Species | Mapped Region | Num. of Genewise | Note: this gene was not anchored on syntenic regions compared to A.thaliana genome. |
|
Species | Region | Mapped Species | Mapped Region | Num. of Genewise | Note: this gene was not anchored on syntenic regions compared to B.rapa genome. |
|
Trplicated Block |
Block | Best Hit | Start | END | Chromosome | Subgenome | Num. of Gene Pairs on Block | Note: this gene was no corresponding triplicated genes. | |
|