Basic Information
Gene Model:Bol031797
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000053
Sequence:
 | 
Gene Structure
Nucleotide Length:741 bp
Transcript Length:741 bp
Protein Length:246 aa
Strand:+
Location:Scaffold000053: 1758636 : 1759376
Gene CDSs(1): 1-741 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00847AP2 52 103 2.5e-21IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 52 113 1e-22IPR016177DNA-binding, integrase-type
ProfileScanPS51032AP2_ERF 53 110 22.221IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 53 116 1.5e-35IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene3DG3DSA:3.30.730.10no description 52 113 3.4e-22IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Segsegseg 193 206 NANot foundNot found
Segsegseg 86 97 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9SIE45e-94ERF56_ARATH Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1
TrEMBL
Best HitE_value Description
A9PFU04e-53A9PFU0_POPTR AP2/ERF domain-containing transcription factor OS=Populus trichocarpa GN=DREB20 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_7987484e-48K09286EREBPEREBP-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL18027(3 genes,3 taxa):Arabidopsis thalianaAT2G22200.1
ORTHOMCL18027(3 genes,3 taxa):Brassica oleraceaBol031797
ORTHOMCL18027(3 genes,3 taxa):Brassica rapaBra030255
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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