Basic Information
Gene Model:Bol031734
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000053
Sequence:
 | 
Gene Structure
Nucleotide Length:1162 bp
Transcript Length:891 bp
Protein Length:296 aa
Strand:-
Location:Scaffold000053: 1070119 : 1071280
Gene CDSs(3): 1-69 | 202-585 | 725-1162 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF47459HLH, helix-loop-heli 104 181 2.3e-14IPR011598Helix-loop-helix DNA-binding
HMMSmartSM00353no description 120 169 1.1e-12IPR001092Basic helix-loop-helix dimerisation region bHLH
Gene3DG3DSA:4.10.280.10no description 110 191 5.4e-06IPR011598Helix-loop-helix DNA-binding
ProfileScanPS50888HLH 101 164 11.553IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMPfamPF00010HLH 115 164 8.6e-09IPR001092Basic helix-loop-helix dimerisation region bHLH
Coilcoilcoiled-coil 153 184 NANot foundNot found
HMMPantherPTHR12565STEROL REGULATORY EL 123 166 0.00018Not foundNot found
HMMPantherPTHR12565:SF7CENTROMERE-BINDING P 123 166 0.00018Not foundNot found
Segsegseg 200 207 NANot foundNot found
Segsegseg 75 85 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q1PF161e-119BH019_ARATH Transcription factor bHLH19 OS=Arabidopsis thaliana GN=BHLH19 PE=2 SV=1
TrEMBL
Best HitE_value Description
C0SV561e-118C0SV56_ARATH Putative uncharacterized protein At2g22760 (Fragment) OS=Arabidopsis thaliana GN=At2g22760 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
osa:43494849e-15K13422MYC2transcription factor MYC2
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL18035(3 genes,3 taxa):Arabidopsis thalianaAT2G22760.1
ORTHOMCL18035(3 genes,3 taxa):Brassica oleraceaBol031734
ORTHOMCL18035(3 genes,3 taxa):Brassica rapaBra030208
Tandem Duplication
ClusterGene Num.Gene List
Cluster_6492Bol031733 Bol031734 
Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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