Basic Information
Gene Model:Bol031733
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000053
Sequence:
 | 
Gene Structure
Nucleotide Length:1525 bp
Transcript Length:978 bp
Protein Length:325 aa
Strand:-
Location:Scaffold000053: 1007736 : 1009260
Gene CDSs(3): 1-69 | 164-577 | 1031-1525 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF47459HLH, helix-loop-heli 123 193 1.5e-14IPR011598Helix-loop-helix DNA-binding
HMMSmartSM00353no description 139 188 4.2e-14IPR001092Basic helix-loop-helix dimerisation region bHLH
Gene3DG3DSA:4.10.280.10no description 129 209 1.1e-06IPR011598Helix-loop-helix DNA-binding
ProfileScanPS50888HLH 117 183 12.892IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMPfamPF00010HLH 134 183 9.7e-11IPR001092Basic helix-loop-helix dimerisation region bHLH
Coilcoilcoiled-coil 172 200 NANot foundNot found
HMMPantherPTHR23042CIRCADIAN PROTEIN CL 141 184 2.8e-06Not foundNot found
Segsegseg 217 233 NANot foundNot found
Segsegseg 41 52 NANot foundNot found
Segsegseg 66 81 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q8S3F11e-123BH020_ARATH Transcription factor NAI1 OS=Arabidopsis thaliana GN=NAI1 PE=2 SV=1
TrEMBL
Best HitE_value Description
C0SV567e-51C0SV56_ARATH Putative uncharacterized protein At2g22760 (Fragment) OS=Arabidopsis thaliana GN=At2g22760 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002506078e-14K13422MYC2transcription factor MYC2
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL26491(2 genes,2 taxa):Brassica oleraceaBol031733
ORTHOMCL26491(2 genes,2 taxa):Brassica rapaBra030207
Tandem Duplication
ClusterGene Num.Gene List
Cluster_6492Bol031733 Bol031734 
Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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